| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5315 |
|---|
| Symbol | |
|---|
| ID | 7380678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 315851 |
|---|
| End bp | 316270 |
|---|
| Gene Length | 420 bp |
|---|
| Protein Length | 139 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643648940 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547177 |
|---|
| Protein GI | 222106386 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4922] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.747889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGACA CGAAGACCCA TGACCATGCG AAACTTGAAC GCCACAAACA TCTGGTCCGG
GAATTTTACC GCCGGGTGTT CGATGGCCAG AACCCCGCAG CCGTCAAGGA TTTCGTCACA
GAGGATTATA AGCAGCACAG CCGCCATATT CCGACCGGCC GCGAAGGCTT GGAACGGTTT
GTGCAATCGG TGTTTCCAAA TGGACCAGTC CCCGAACCGG CCGAGATGCG CATCCCTCCC
GCCTTCATGG TGGCGGAAGG CGACATGGTG GTGGTCGCCG CCTATCTGCC GCAGCCAGAC
CCCGATAAGC CGGGCGAAAC CTACGACTAT TTCGTTTTTG ACGCCTATCG GCTTCGAGAC
GAGCGTCTGG CGGAGCATTG GAGCGGCGTG AACAAGATCG CGCCACCAAA ACAGCCCTGA
|
|---|
| Protein sequence | MHDTKTHDHA KLERHKHLVR EFYRRVFDGQ NPAAVKDFVT EDYKQHSRHI PTGREGLERF
VQSVFPNGPV PEPAEMRIPP AFMVAEGDMV VVAAYLPQPD PDKPGETYDY FVFDAYRLRD
ERLAEHWSGV NKIAPPKQP
|
|---|
| |