Gene Avi_5259 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5259 
Symbol 
ID7381380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand- 
Start bp253758 
End bp254432 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content54% 
IMG OID643648892 
Producthypothetical protein 
Protein accessionYP_002547129 
Protein GI222106338 
COG category[S] Function unknown 
COG ID[COG4675] Microcystin-dependent protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0135116 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATGCGT TTCTTGCGAC TATCTTACCG GTCGGCTTCA ATTATGCACC TGATGGCTGG 
CTCATGTGCT GGGGTCAAAA ACTAACGATA AATCAATACA ATGCCGTCTA TTCACTTGTT 
TCAAATTTCT ACGGCGGGGA CCAGCAAACC TATTTCAACC TGCCGGACCT GCGCGGTCAA 
ATGCCCATCG GATATGGACA ACGTACGCCC ACCAGCCCGA ATTATGCGAT CGGCAACAAA 
GGCGGAAATG ATACCGTTTC GTTGAATTCA ACCCAAATTC CGGCCCATAC CCATGCGGCT 
GTCTTTACGC CCACTGGCAA TGCCACGGTG AATATACCAG CGCAGACAGG AACGCAGACT 
GCAACCATGA AGGCAAGCCC AGCTGCGGGA ACTTCCCAGT TGCCAACGGC GGGCTCTGCC 
CTTGCTGGTG GAAATACGGC AGCCACAAGG ATCTACGGCG CTGCTTCAAC GACACCAGTC 
ACTCTCGATA GTAGCAGCGT TACCATTTCC GGAAATGCGC CGACGGCGGC TCAGAGCATT 
GCCACCAATG CGATCACAGG CGGAGCTGTG ACGGTGCAGC CATTTGGTAC CGGTGCTGCT 
ATCGACGCCA AGCCTCCTTA CCTGGCGATC AATTTCATTT TCTGCGTTCA AGGCCTCTAC 
CCGGTTCGTC CATGA
 
Protein sequence
MDAFLATILP VGFNYAPDGW LMCWGQKLTI NQYNAVYSLV SNFYGGDQQT YFNLPDLRGQ 
MPIGYGQRTP TSPNYAIGNK GGNDTVSLNS TQIPAHTHAA VFTPTGNATV NIPAQTGTQT 
ATMKASPAAG TSQLPTAGSA LAGGNTAATR IYGAASTTPV TLDSSSVTIS GNAPTAAQSI 
ATNAITGGAV TVQPFGTGAA IDAKPPYLAI NFIFCVQGLY PVRP