Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5211 |
Symbol | |
ID | 7381341 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 207483 |
End bp | 208559 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643648853 |
Product | HlyD family secretion protein |
Protein accession | YP_002547090 |
Protein GI | 222106299 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAGAC GAATGATCCT ATGTACCACA GGCGTTCTTG CCGTGTTTCT AACCGCCTGT TCGGATGAAG CCAGCACGCC AAAGACACCT CGCGCCATTA AAGGGGTCAC AGTCAAATCG GAGCTTATCG GGGAAGTCTT TCGCCAGACC GGCGAGATCC GCCCACGTTA TGAAACGCCG ATGAGCTTCA GGATCGATGG ACTGGTGGCT TTTCGCGTCG AGACGGGATC ATCCGTCAAA AAAGACGATG TGCTTGCAAC AGTAGAAAAG ACACCGGCCT TGATCAATGT CGCGTCCGCA TCCGCGCAAG TCGATGCGGC AAAATCGGAT TTGGCGCTGG CGGATGTTAA CGCGGCTCGC AACTGGAACC TCATCGCCAA GAATGCGGTG TCGCGCGCCC AGGTCCAGCA GAGCGATGCC AATCTGCAAG CGGCGAAGTC AAAGCTTGAA GTCGCCAACG CGACTTTGGC GAGCGCACAA CAGAACCTCT CCTATACGGA TCTGAAAGCG GGACGAGACG GTATCGTATC CGGCGTTTCC ATCAATGTGG GTCAGGTCGT CACCACGGGG CAAACGGTCC TGACCCTCAG TTCTGATACC GAACTTGATG CCGTCTTCGA TGTGCCTGAA CAGATGCTAA CCCAGAACCT TGGCGATAGC GAGGTTGACG TCAGCCTGAT GTCCAATCCG GCCGTTGTCG CCAAGGGCAA GGTTCGCGAG GTCACGCCTT CCGCTGATAC TGCAACGCGG ACCTACCGTG TCAAGGTTAC GTTGAATGGC ACGTTGGACG GGGCGCCGTT GGGCGCTGTG GTCACGGGTA AGGTAACCCT TTCGCCAAAG CCTGTCTTCA AGGTTCCCGC GTCTGCATTA ACCAGTCAGG GGCAGAACCA AGCCGTTTTC GTCTACTTAC CGACCTCCAA AATGCTCCAG CTTCGCCCGG TCAAAATAGA ACGATACGGC GAAAACGACA TGCTCATCTC CGAAGGCCTG GCCGATGGCG ATATCGTCGC GATCGCCGGT GTTAGCAAGT TGCGCGACGG CGAGGCGGTC ACTCTTGAGA AAGGGGTGCA ATCGTGA
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Protein sequence | MLRRMILCTT GVLAVFLTAC SDEASTPKTP RAIKGVTVKS ELIGEVFRQT GEIRPRYETP MSFRIDGLVA FRVETGSSVK KDDVLATVEK TPALINVASA SAQVDAAKSD LALADVNAAR NWNLIAKNAV SRAQVQQSDA NLQAAKSKLE VANATLASAQ QNLSYTDLKA GRDGIVSGVS INVGQVVTTG QTVLTLSSDT ELDAVFDVPE QMLTQNLGDS EVDVSLMSNP AVVAKGKVRE VTPSADTATR TYRVKVTLNG TLDGAPLGAV VTGKVTLSPK PVFKVPASAL TSQGQNQAVF VYLPTSKMLQ LRPVKIERYG ENDMLISEGL ADGDIVAIAG VSKLRDGEAV TLEKGVQS
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