| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5186 |
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| Symbol | |
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| ID | 7381322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 181293 |
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| End bp | 184463 |
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| Gene Length | 3171 bp |
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| Protein Length | 1056 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643648835 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_002547072 |
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| Protein GI | 222106281 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAGA CATCCAGCAA GAATTTTGGC GGTACACTCT TAAAACATAA GAACATCTTT
CCTGGCATCG TTAAATACCT CTCAAAATCC CTTGTTTTTC CATCTATTAC TGTAACGGCC
GTGGTTTCCT GTTCAGGCGT CAGTCTTGCT CAAGATGTCG TGCTTGATAG CGGTAACACG
ACCTGGACGA GTGATACGCT GGTCGATGGT GATCTCTATG TCGGATACAA CAACAAAGAC
ATCGGCCTGA CGATTGCCAA TGGCGCGAAA GTGTACAGCA CAAATGGTTA TGTAGGCTAC
CGGGTTGGTA GTTCAGGGAC TGTCATTGTC AGCGGTCCCG GTTCTTCCTG GATCATTCCC
AGGGTCAATT ACGTCCTGGC AAATAATATT ACGGTCAATC AAAACGGCAC TCTCAATATC
GAGAATGGCG GTACTGTCGA CGCAAAATAT TTTACGTTCG CGAGCACGTC GCAGCTGAAT
GTGACTGGAA GTGGCTCGAC CTTGACTGCG GACCGCATTT CCAATTCCGG AACGGTCCTC
ATCGCGAATG GGGGCTCGAT CAATGCGATC GACGCAGAGT TCAGTGGCCT CCCGGCGGAC
GGCACGGATA ACAGCCTTGC AAATTTTGTT GTCCGCGGCG CTGGCTCGAA GGTGACAAGT
ACCGGAACGT TGACGGTTGG CGCCAATGCA AGCATCGAAG ACGGCGGTGC TATCGTCGCC
CAGGATGTTG GAATCGGCAC AAGCGGTAGC TTTCAGAATT TCGTGGTCAC AGGCGCCCAA
TCCCGCATGG ACGTCAATGG CACACTGACG GTCAATGGTG GGTATGCCCC TAACTCGAAT
ATATCCATTG CCGATAGCGC CAACTTGAAT GTCAAGAACG GCATCACAAT GGCAACGGGC
GGTCACCTGA CCATTGGCGG CAAGATCGAT CTGGGAAATC TGGCCCTTGG AGGCGAGCCC
AAAGGCCAAG CCGCCGCTGC TGCCGGCTAT ATCAATCCTG ACGCGGTTAT TTCCTTCGGT
TCATCCGAGA GGGCATACCT GAATTTTAAC CACACCCAAA CCGGCTATAT CTTTGCCAAT
GCATTGACCG GTGACGGAAA CATCAAGTCC ATGTCGGGCG AAACAATTCT GACGGGGGAT
CTCAGCAAGT TCGAGGCCAC CGATAATCTC GGCGGAATCA TTGTCGACGG TGGCAGTACA
TTGGTTCTGG CCAGCAATCT GGGAACAGCC GTTACCAATT ACGACAATGT CTTCGCATGG
CAGACGAATA TTGATGTCAA GAACGGCACC TTCAACGTCA AGGCGGACAC GGGCGCTATC
AGGAAGAACT TCCTTGGAAG CGAATATTTT TCATCGAATA TCGATGTCTG GGGCGATCGG
AATGCTGGTA CGGCATTCGG ACGGCTGATC GGGTCTGGAG CCGTCGGCAA TGTCACGCTG
GAAAAGGGTG CGCTGATTTC ACCCGGAAAT TCCGACAATG CCATCGGCAC CTTCACGGTG
AACGGCAACA TTTCTTTCGG GGAAGGCTCG GCTTATGATG TCGATATTGC CGGAAATGGC
ACCAGCGACA AAATCGTCGT TCAAACCCTG AAGGCATGGA CCGGAACCGA TGCCCAGAAT
AATCCGACCT ATGTGGATAG CGCGGGTAAA ACCTCAATCG CTAACAATGT GTCCGTGCAG
GTGACAGCTC TCGATGCTGC AACCAGTTAT CAAACCGGCC AGACCTATAC GATTCTGTCA
TCGGCTGGCG GTATCCAGGG GCAATTCGCT CAAGCCATTT CGAAGTCGGC CTTTCTGGAT
GTGGCATTGG CTCAAACGTC AAACCAGGTC GATCTGACCA TCGCTGTCAA GGATACAGGT
ACGCCTAACC CCGGAACACC TAATCCCGGC AATCCTGATC CTGGAACCCC AAATCCAGGT
ACGCCAAATC CTGGTAATCC CGATCCAGGA ACACCCAATC CGGGCAATCC CGATCCGGGA
ACCCCAAACC CCGGAACACC CAACCCTGGC ACGCCATCGC CCGGCCTGTT CGATTCTGTC
GCCGTAACCG GCAACCAGCG CAATGTCGCT CGGGCTCTCA ATACCTTGCA GCAGAGCGGG
CAGTCGCTTG CGCTCTATAA CAGCCTGTTG CCGTTAAGTG CAGAAGAAGC GCAGCATGCC
TTCGAAGCGC TTTCCGGCGA GGTCCACGCA TCTGCCATGA ATACGCTGGT CACCAGCAGC
ACGTTGCTGC GCAATTCGGT CAATGACCGG ATGCGGGCAT CGTTCAACAC GGTGGGCGCA
CGTCCGACAC CGGTCATGGC CTATGCGGAG GGTGATAGTA AGTTCGATAC GGCTTACAAG
GACATCCCCC TATTTACGGC CTGGGGCCAG GGCTTCGGCA CATGGAACAG CATCGACGGC
AATGGCAATG CTGCGGACCT GAGTTCGTCC ACCGGCGGTT TCGTGGCGGG TCTCGACGTT
CCGGTCTCCG CCGATTGGAG ATTGGGTGCC GTTGGCGGCT ATAGCCGGTC CAGCTTCGAT
GCCAATGACC GCTCATCCTT TGGCCATAGC GATAACTATC ATCTCGGCAT GTATGCCGGA
GCGCAATACG GAGAATTGTC CTTCCGCTCA GGCCTTACCT ATACCTGGCA TCAGGTGTCG
ACCAATCGAT CCGTGGCATT CTCCGGTTTC AACGACCATC TGAAGGCTGA TTACGACGCT
GGCAGCTTCC AGGCCTTTGG TGAACTCGGT TATCGCATCG ATGTCAGCAC CGTGGCTTTC
GAGCCCTTCG CCAACCTCAC CCATGTCAAT GTTCAGAGAG ACGGCTTTAA TGAGCGTGGT
GGCATTGCAG CCTTGTCGAG CCCGAGCGAC AGCCTGGACA CGACACTGAC GACCCTTGGC
TTGCGCGCCT CTTCCGATTT CATGCTGGGC GGCTATATCG CAAAGGCCAG AGGCATGCTT
GGTTGGCAGC ACGCCTTCGG TGATACCGAC CCAACTTCAC GCCTGGCATT TGTCGGTAGC
CAGAGCTACG TTGTGTCCGG TACACCTTTG ACCAAGGATG CGGCCGTTGT CGAACTCGGG
CTCGATGTCG GGCTCAGCGA TACCGCCACG ATCGGCATTG GCTATTCCGG TGAATTCGGT
AGCAATGAAA CCTCAAACAG CATCAACGCA AAGCTGGATG TCCGTTTCTG A
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| Protein sequence | MSKTSSKNFG GTLLKHKNIF PGIVKYLSKS LVFPSITVTA VVSCSGVSLA QDVVLDSGNT
TWTSDTLVDG DLYVGYNNKD IGLTIANGAK VYSTNGYVGY RVGSSGTVIV SGPGSSWIIP
RVNYVLANNI TVNQNGTLNI ENGGTVDAKY FTFASTSQLN VTGSGSTLTA DRISNSGTVL
IANGGSINAI DAEFSGLPAD GTDNSLANFV VRGAGSKVTS TGTLTVGANA SIEDGGAIVA
QDVGIGTSGS FQNFVVTGAQ SRMDVNGTLT VNGGYAPNSN ISIADSANLN VKNGITMATG
GHLTIGGKID LGNLALGGEP KGQAAAAAGY INPDAVISFG SSERAYLNFN HTQTGYIFAN
ALTGDGNIKS MSGETILTGD LSKFEATDNL GGIIVDGGST LVLASNLGTA VTNYDNVFAW
QTNIDVKNGT FNVKADTGAI RKNFLGSEYF SSNIDVWGDR NAGTAFGRLI GSGAVGNVTL
EKGALISPGN SDNAIGTFTV NGNISFGEGS AYDVDIAGNG TSDKIVVQTL KAWTGTDAQN
NPTYVDSAGK TSIANNVSVQ VTALDAATSY QTGQTYTILS SAGGIQGQFA QAISKSAFLD
VALAQTSNQV DLTIAVKDTG TPNPGTPNPG NPDPGTPNPG TPNPGNPDPG TPNPGNPDPG
TPNPGTPNPG TPSPGLFDSV AVTGNQRNVA RALNTLQQSG QSLALYNSLL PLSAEEAQHA
FEALSGEVHA SAMNTLVTSS TLLRNSVNDR MRASFNTVGA RPTPVMAYAE GDSKFDTAYK
DIPLFTAWGQ GFGTWNSIDG NGNAADLSSS TGGFVAGLDV PVSADWRLGA VGGYSRSSFD
ANDRSSFGHS DNYHLGMYAG AQYGELSFRS GLTYTWHQVS TNRSVAFSGF NDHLKADYDA
GSFQAFGELG YRIDVSTVAF EPFANLTHVN VQRDGFNERG GIAALSSPSD SLDTTLTTLG
LRASSDFMLG GYIAKARGML GWQHAFGDTD PTSRLAFVGS QSYVVSGTPL TKDAAVVELG
LDVGLSDTAT IGIGYSGEFG SNETSNSINA KLDVRF
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