| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5134 |
|---|
| Symbol | rbsC |
|---|
| ID | 7380937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 122632 |
|---|
| End bp | 123681 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643648790 |
|---|
| Product | ABC transporter membrane spanning protein (ribose) |
|---|
| Protein accession | YP_002547027 |
|---|
| Protein GI | 222106236 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.180892 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGA TCATCACCGA CAAGCCACCG CAGGCGGACC AGAAAAAGGG CCACAAAAGG
GGACTGAGCG ACCGGCAAAA AGATATCATC CAGAAATTTG CAGCGCTTGG CTGCCTGGTC
GTTCTGGCCG CCGTGTTTGC TCTTACATCC AATGCCTTCC TGAGCGTCAA CAACGGCATG
ACGATTGCGC TACAGGTCAC GTCGATTGCC TTTCTCGGCA TCGGGGCAAC CTATGTCATC
ATCACCGGGG GCATTGACCT CTCGGTCGGC TCCGTGCTGG CCCTTGCCGG GGTGGTCGCC
GCCCTTGCCG TCAAGGAACT CGGCGCGCCG GTGTGGATCG GCATGGTGCT CGGCGTTCTC
ACCGGCACGG CCTGCGGCGT CATCAATGGC CTGGTCATTA CCAGGCTGAA GCTGCCGCCG
TTCATTGCGA CCCTTGGCAT GATGCTGATT GCACGGGGCG TCGCACTACA AATCACCGGC
GCACGCGCCG TCTCGGGCCT TGGCGAATCC TTCGGGGTTT TGGGCAATGG TTCGCTGCTG
CGCTTCGAAA GCATTGACGA TCAAGGATTT CCAGTGGTCA GCTTTCCGGG CATTCCCTAT
CCCGTGGTGC TGATGGTCGT CATTGCCGTG GCCGCTGCCT TCGTGCTGAA CCGAACCGTG
CTTGGCCGGC ATATCTATGC CACCGGCTCG AATGCGGACG CCGCCCAGCT CTCAGGCGTC
AATGTCGCCC GCGTCACCGC CTTCACCTAT ATCGTCTCCG GCACGCTGGC CGGTCTCACC
GGCTGTATGC TGATGTCTCG TCTCGTCACC GCCCAGCCGA ATGAGGGCGT GGCCTATGAG
CTGGATGCAA TCGCGTCTGC GGTGATTGGC GGAACCTCGC TGATCGGCGG TGTCGGCACG
ATTTCCGGAA CCTTCATCGG TGCCTTTGTC ATCGGCATCC TGCGCAATGG CCTGAACATG
AACGGCGTCT CCGCCTTCAC CCAGCAGATC ATTATAGGCC TCGTCATTCT CGGCACCGTC
TGGATCGATC AGATCCGCAA TCGGAAATAA
|
|---|
| Protein sequence | MAEIITDKPP QADQKKGHKR GLSDRQKDII QKFAALGCLV VLAAVFALTS NAFLSVNNGM
TIALQVTSIA FLGIGATYVI ITGGIDLSVG SVLALAGVVA ALAVKELGAP VWIGMVLGVL
TGTACGVING LVITRLKLPP FIATLGMMLI ARGVALQITG ARAVSGLGES FGVLGNGSLL
RFESIDDQGF PVVSFPGIPY PVVLMVVIAV AAAFVLNRTV LGRHIYATGS NADAAQLSGV
NVARVTAFTY IVSGTLAGLT GCMLMSRLVT AQPNEGVAYE LDAIASAVIG GTSLIGGVGT
ISGTFIGAFV IGILRNGLNM NGVSAFTQQI IIGLVILGTV WIDQIRNRK
|
|---|
| |