| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5129 |
|---|
| Symbol | |
|---|
| ID | 7380933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 118171 |
|---|
| End bp | 119460 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643648786 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547023 |
|---|
| Protein GI | 222106232 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.296521 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCA TTACCGATCT CAATGTTTTC GACCTGCGCT TTCCGACATC TGCAAGCCTC
GACGGCTCCG ATGCCATGAA CCCGGACCCG GATTATTCAG CGGCATACGT GGTCCTCGAA
ACGGATGAGC CTGGCCTGGA AGGCCATGGC CTCACCTTTA CCATTGGCCG CGGCAACGAT
ATCTGCTGTA TGGCGATCAA GGCCATGCGC CATCTGGTGG TGGGCGTGGA TCTGGACGAA
GTACGGGCTG CGCCTGGCAA GTTCTGGCGA AAGCTGACTG GCGATAGCCA GTTGCGCTGG
ATCGGACCCG ACAAGGGCGC CATGCATCTG GCAACAGGCG CTGTCGTCAA TGCCTTCTGG
GATGCCATGG CAAAGCAGGC CGGTCTGCCG GTGTGGCAGT TCGTATCGAC CATGTCACCG
GAAGAGATCG CCGATATCGT CGATTATCGC TATCTCACCG ATGCGCTGAC CCGCGAGGAA
GCTGTCGCGA TTTTACGCAA GGCGGAGGAC GGCAAGGCCG ACCGCATCGC GCTTCTCGAA
AGGCAAGGCT ATCCCTGTTA CACAACCTCG GCCGGATGGC TGGGATATGA CGATGACAAG
CTGCGCCGTC TGGCGCAGGA CGCCATCGAC CAGGGTTTCA ATCATATCAA GATGAAGGTT
GGGCGTGATC TTGAGGATGA CATTCGTCGT CTGACGATTG CCCGCGAGGT GATCGGTCCG
GATCGGTATC TGATGGTCGA TGCCAATCAG GTCTGGGAAG TCGGCCAGGC CATCGACTGG
ATGAAAAAGC TCGCCTTTGC CAAACCTTTT TTCATCGAGG AGCCAACCAG CCCGGACGAT
GTGGCAGGTC ACCGCAAGAT CCGCGATGCC ATTGCGCCGA TCAAGGTCGC AACCGGCGAG
ATGTGCCAGA ACCGCATCAT GTTCAAGCAA TTCATCACCG AAGGCGCGAT TGACATCGTC
CAGATCGATT CCTGCCGCAT GGGTGGGCTC AACGAAGTTC TCGCCGTACT GCTGCTGGCG
GCGAAATATG AAAAGCCTGT CTGGCCGCAT GCGGGCGGTG TTGGGCTGTG TGAATATGTC
CAGCATCTTT CGATGATCGA TTATATCGCG GTCTCCGGCA CCAGAGAGGG CCGCGTGATC
GAATATGTAG ACCATCTGCA CGAACACTTC ATCGATCCCT GCGTCATCCG CAACGCCGCC
TATATGCCGC CATCCCGCCC CGGCTTCTCC ATCGAGATGA AGCCTGAATC AATTGCTGCC
TATACGTTCC CCACCTCAAA GGCAGTCTGA
|
|---|
| Protein sequence | MTRITDLNVF DLRFPTSASL DGSDAMNPDP DYSAAYVVLE TDEPGLEGHG LTFTIGRGND
ICCMAIKAMR HLVVGVDLDE VRAAPGKFWR KLTGDSQLRW IGPDKGAMHL ATGAVVNAFW
DAMAKQAGLP VWQFVSTMSP EEIADIVDYR YLTDALTREE AVAILRKAED GKADRIALLE
RQGYPCYTTS AGWLGYDDDK LRRLAQDAID QGFNHIKMKV GRDLEDDIRR LTIAREVIGP
DRYLMVDANQ VWEVGQAIDW MKKLAFAKPF FIEEPTSPDD VAGHRKIRDA IAPIKVATGE
MCQNRIMFKQ FITEGAIDIV QIDSCRMGGL NEVLAVLLLA AKYEKPVWPH AGGVGLCEYV
QHLSMIDYIA VSGTREGRVI EYVDHLHEHF IDPCVIRNAA YMPPSRPGFS IEMKPESIAA
YTFPTSKAV
|
|---|
| |