| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5122 |
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| Symbol | agpT |
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| ID | 7380926 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 112016 |
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| End bp | 112960 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643648779 |
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| Product | transcriptional regulator AraC family |
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| Protein accession | YP_002547016 |
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| Protein GI | 222106225 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.962416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAATT CTGTGCTAAA GATGATGATT GACGCTGGGC CGATCATGCG CACCGTTTCG
CTGCCTCGGG GCCGCCATAG CCTGCATACC ATGCCGACAA GCACAGGCTA TGAAGTGCGC
AGCGATGCCA CCTATGACTG GGATGGCAGG AAGCGCGGGC AAACACCGTT TACCGTTCTT
CAGCACACGA TCTCGGGTGC TGGAAACCTG CGCTATGAAA ACAGCACCTA TCGGGTCACG
CCGGGCCAGA CATTGCTGGT CCTGGTGCCG CATAATCACC GTTATTGGCT GGAGCCCGGA
GGACGCTGGG AGTTCTTCTG GATTTCGATG AATGGCGAGG AAGCGCTGCG AATCCATAAT
GCGATCCTCA CGGCCATGGG ACCTATTTTC AATCTGAACC AGCAGACCGT CGAGCATCTT
GCCGATTGCA GCCAACGCCT CATTGCCGGG GGCGCGGAGA CGCCGGGACG GGCCTCTGCA
ATCGCCTATG AGGCCGCCAT GGCGCTTTAT GACGATGTGT TTGGCTCACA TCCGACCTTG
AGCGCGGAAT ATCGCACAAT GCAGCATGTC ATCGATCATA TTTCGGCCAA TCTGGATCAG
TCTCTCTCCG TTGAGCAACT GGCGGCAGTG TCTGGTCTCA GCCGAGCCCA TTTTTCACGG
GTCTTTGCTG CGAGCGAAGG CATGCCGCCA GCGGAATTCG TGCTGCATAA ACGGCTGAAA
CGAGCAGTCA AACTGCTGAC AAAGGGCTCG CATCTCTCCG TAAAGGAGAT ATCGACGATG
TGCGGCTTCG AAGAGCCGAA CTATTTCTCC AAGGTTTTCA GGCGGCATTT CGGAGCCAGT
CCGACCGAGT TCAGAACGAC CGGAATGTAC TCAAGCATAT TGCAGGGGGG CGTTGAGGCC
GAGACAAAAC CGGCTCGATT TCATAGGCCC GACGTGAACG AGTGA
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| Protein sequence | MGNSVLKMMI DAGPIMRTVS LPRGRHSLHT MPTSTGYEVR SDATYDWDGR KRGQTPFTVL
QHTISGAGNL RYENSTYRVT PGQTLLVLVP HNHRYWLEPG GRWEFFWISM NGEEALRIHN
AILTAMGPIF NLNQQTVEHL ADCSQRLIAG GAETPGRASA IAYEAAMALY DDVFGSHPTL
SAEYRTMQHV IDHISANLDQ SLSVEQLAAV SGLSRAHFSR VFAASEGMPP AEFVLHKRLK
RAVKLLTKGS HLSVKEISTM CGFEEPNYFS KVFRRHFGAS PTEFRTTGMY SSILQGGVEA
ETKPARFHRP DVNE
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