Gene Avi_5052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5052 
Symbol 
ID7381209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp43550 
End bp44278 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content60% 
IMG OID643648723 
Producttranscriptional regulator 
Protein accessionYP_002546960 
Protein GI222106169 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.259786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGAAC CAGGCAGCCT GCTTCGCTCC CTTTCCGGGC GGATCACGGC GCGCAATTTC 
CACTCTCACG TCATCAACGA AATCGGAGCG GGCGTCATTT CCGGGCGCTT TGCCGTTGGC 
TCCATCCTGC CCAATGATGC TGCTCTGATG GATGAATTCA GCGTCTCGCG CACTGTGCTA 
CGAGAGGCTT TGAAAACGTT GGAGGCCAAG GGCCTGGTGG AAGCCCGACC CAAGGTTGGC 
ACCAAGGTTG CCAAGAAAAG TCGCTGGAAC CTCTATGATC GCCAGGTCTT GGCCTGGTGT 
CTCGAAACCC AGCCGGATGA CGAGTTTTTG CGCGGGCTTG GCGAGGTACG GCGTTCTCTG 
GAGCCGCTGG CGGCTGGTGA TGCTGCCCGC GATCATACCG GTGACCAGAT CCGTCTGATG 
CATTACTGGC TGAGGCAGAT GGAGCTTGCC CTGGATGAGC CGCAAAGCTT CAGCCTGGCC 
GATTTCGAGC TGCACAGGAT CATCGCTGAG GCATCCAGCA ATCCGTTCCT GCGGGCATTG 
CAGGGCGTGA TCGAACTGTC CCATGCGCTC GCTTATTTGC CCGCCGTGCG CGACGGCAAG 
GTTTGCGAGC TCACAGCCGT GTTGCAAAGC CACCGCGTGC TCGTCACCGC CATTGAGCGC 
GGTCTTGCCG AAGAGGCAGC GGCAGCGATG ATTGGCACCA TCGAGCAGGA CCACGCACGA 
ATGTCGTAA
 
Protein sequence
MIEPGSLLRS LSGRITARNF HSHVINEIGA GVISGRFAVG SILPNDAALM DEFSVSRTVL 
REALKTLEAK GLVEARPKVG TKVAKKSRWN LYDRQVLAWC LETQPDDEFL RGLGEVRRSL 
EPLAAGDAAR DHTGDQIRLM HYWLRQMELA LDEPQSFSLA DFELHRIIAE ASSNPFLRAL 
QGVIELSHAL AYLPAVRDGK VCELTAVLQS HRVLVTAIER GLAEEAAAAM IGTIEQDHAR 
MS