| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5004 |
|---|
| Symbol | |
|---|
| ID | 7381172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 6736 |
|---|
| End bp | 7689 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643648686 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002546923 |
|---|
| Protein GI | 222106132 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0392] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAGA AGATTTTGTT GAATGGCATT TTCCTTGCTG CGACAGCAAT AGCCCTCTGG
CTGAGCTACC GGGCACTGAG CAAATTCTCC CTCAACGATA TCGAAATGTC ATTGTCTGCC
ATCCCTTGGA CAGGTTTTGC TCTGTCATTA TTTTTTTGTG CCGTCTCCTA CCTTTGTCTG
ACTGGCTTCG ACTATCTTGG CATCCTCTAT GCTGGTTCTC GTTTGTCCTG GCGAAAAGCC
GCGGTCGCGT CTTTTGTCAG CCTCTCTATC GGACATAATG TCGGCTTGGC GGCGCTGTCC
AGCGGTGCGG TCCGCTATCG GTATTATCGG CGCTGGGGCC TAAAAAACGA GGAAGTCGCC
AAAATCATTC TCTTTTGCGG CGCAACCGTC GGAATCGGCT TGATAGGATT GGCTGGCATT
TGCCTTGCCC TGTTTCCGCA GAGTGCGGCC AAGCTCGGCG GCATGGGGAG TTTCGCTGCT
CGGCTGATTG GATTTGCCTG TCTGGCTGCA ATTGGCATCT ATCTCGTGGC CTCAGCCTGG
CTGCGCGGTG AAATACGAAT ATACAAATGG CGTTTCTCAC TGCCAACCCT GCCTATCGCC
CTTGCCCAGG TTGCTGTTGG CATCGCCAAT TTCGCTGCCG TCGCCGCTTG TCTCTTTTGG
TTGGCAAGAT CGTCCGCAGG TTTTTTTGAA ACGACAACCG CCTATGTCAT GGCTAACCTC
TCGGCGCTGG TTGCCCATGT TCCTGGTGGA CTTGGCGTCA TGGAAGCGAC GATCTCATTC
ATCATGGGCA AAGACGCATC GATCGGCGCG CTCATTGCAT TTCGCGTTGT GTATTTTTTC
ATTCCGCTGG CAATCGGCAT CCCGGTCTTT GCCATCAGTG AATGGTATTA TTCGCGCCGC
GAACGCCGGA ATAATTCCTC GTCAAATGAG ACGGTGAAAG CAGCAACTCT TTGA
|
|---|
| Protein sequence | MQKKILLNGI FLAATAIALW LSYRALSKFS LNDIEMSLSA IPWTGFALSL FFCAVSYLCL
TGFDYLGILY AGSRLSWRKA AVASFVSLSI GHNVGLAALS SGAVRYRYYR RWGLKNEEVA
KIILFCGATV GIGLIGLAGI CLALFPQSAA KLGGMGSFAA RLIGFACLAA IGIYLVASAW
LRGEIRIYKW RFSLPTLPIA LAQVAVGIAN FAAVAACLFW LARSSAGFFE TTTAYVMANL
SALVAHVPGG LGVMEATISF IMGKDASIGA LIAFRVVYFF IPLAIGIPVF AISEWYYSRR
ERRNNSSSNE TVKAATL
|
|---|
| |