| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4208 |
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| Symbol | trmD |
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| ID | 7386970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3541710 |
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| End bp | 3542459 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652888 |
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| Product | tRNA (guanine-N1)-methyltransferase |
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| Protein accession | YP_002551061 |
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| Protein GI | 222150104 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.135356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAGCC GAAGAGCGGC GGCCGCTGAT ATGACCTTTC AGGCAACTGT GCTGACGCTC
TACCCGGAGA TGTTTCCCGG GCATCTCGGC GTGTCGCTGG CAGGCCGAGC GCTGGAGCGC
GGCCAATGGG CCATGGAGGC GGTGCAGATC CGCGATTTTG CCAGTGACAA GCACCGTAGC
GTTGATGATA CGCCCGCCGG TGGTGGGGCA GGCATGGTGC TGAAGCCGGA TGTGCTGGCC
AAAGCCATAG ACAGTCTGGG AAACGATGAC CGCCCCCGCC TGCTGATGAG CCCACGGGGC
AGGCCGCTCA CCCAGAAACG GGTCCGCGAA ATCGCTGGCG GTAGCGGCGT GGTGATCGTC
TGCGGACGAT TTGAGGGTGT CGACCAGCGG GTCATTGAGG CCCGCAATCT GGAGGAAGTC
TCCATCGGCG ATTATATTCT CTCAGGCGGA GAGCCAGCGG CCCTGACGCT TCTGGATGCC
GTGGTGCGTA TCATCCCAGG CGTGATGGGC AATGACCTGT CCGGCCTGCA TGAAAGCTTC
GAGGGCGGAT TGCTGGAACA TCCGCATTAT ACCCGCCCGC AAGTCTTCGA GGGACGCGAG
ATCCCGGCGG TGCTGACCTC GGGCAATCAC GGTGCCATCG AGGCCTGGCG CCAGGAGCAA
TCTGAGACAC TGACCCGCGA GCGGCGACCC GATTTGCTTT CTCAGCCCTC AGCAAATCAA
CCCCAGGCCA ATCAGCCTTT AAAAAAGTAA
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| Protein sequence | MASRRAAAAD MTFQATVLTL YPEMFPGHLG VSLAGRALER GQWAMEAVQI RDFASDKHRS
VDDTPAGGGA GMVLKPDVLA KAIDSLGNDD RPRLLMSPRG RPLTQKRVRE IAGGSGVVIV
CGRFEGVDQR VIEARNLEEV SIGDYILSGG EPAALTLLDA VVRIIPGVMG NDLSGLHESF
EGGLLEHPHY TRPQVFEGRE IPAVLTSGNH GAIEAWRQEQ SETLTRERRP DLLSQPSANQ
PQANQPLKK
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