| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4207 |
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| Symbol | rimM |
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| ID | 7386969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3541073 |
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| End bp | 3541738 |
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| Gene Length | 666 bp |
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| Protein Length | 221 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652887 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_002551060 |
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| Protein GI | 222150103 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.408553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTTTCAT GTCGCCCGTT TGTCGTTTAT TCTTCCTCCG CGTCTACCCA TTTTCAAACA
GCCCCCGACT GTCGCCAAGG ACCTTCATCC GCCATGACCA AGCTTGAAAA TCCCGTGCTG
ATGGCCGTTA TCGGTGCCGC CCAGGGCCTC CGTGGCGAAG TGCGGGTGAA GTCCTTCACC
GCCGATCCGA TGGCGCTTGG CGATTACGGC AAACTGCATG CCGGAGATGG CCGGGTCTTT
GAGGTGCTGG ATATTCGTGA GGCGAAAACC GTTGTCGTGG TGCGCTTTCG CGGCGTCAAT
GACCGCAATG CCGCCGAAGC CTTGAACGGG CTGGAACTGT TTATCGAGCG CAGTGCGCTG
CCCGATGAAG AACTTGATGA TGACGAATTC TACTATGCCG ACCTGGAGGG TCTGGCGGTG
GTGGATGCTG AAGGCAATAG CTACGGCACC GTGACGGCGG TATTCGATTT CGGCGCAGGC
GATCTGCTGG AAGTAAAAGG ACCGGGCAAG CGCCCCGTTC TTGTGCCATT TTCCGAGGCC
GCCGTGCTGC AAATCGATCT GGAGGAAGGC AAGCTGTTGA TCGACCCGGA AGCAGCAGGC
CTGAAGGACG ACGGGAGCGA GGAACCGTTC AGCGCCGATG GCAAGCCGAA GAGCGGCGGC
CGCTGA
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| Protein sequence | MVSCRPFVVY SSSASTHFQT APDCRQGPSS AMTKLENPVL MAVIGAAQGL RGEVRVKSFT
ADPMALGDYG KLHAGDGRVF EVLDIREAKT VVVVRFRGVN DRNAAEALNG LELFIERSAL
PDEELDDDEF YYADLEGLAV VDAEGNSYGT VTAVFDFGAG DLLEVKGPGK RPVLVPFSEA
AVLQIDLEEG KLLIDPEAAG LKDDGSEEPF SADGKPKSGG R
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