| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4135 |
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| Symbol | sdhA |
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| ID | 7386912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3486334 |
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| End bp | 3488190 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652830 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_002551003 |
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| Protein GI | 222150046 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCGA CAAGTTCTTC TTCCAAGGCC GGCCCAACCA TCAATGGCCG CAGTTATACC
TATGTCGATC ACGCTTATGA CGTGGTCGTT GTCGGCGCCG GTGGCGCTGG CCTGCGCGCC
ACGCTCGGCA TGGCCGAGCA GGGTTTCAAG ACCGCCTGTA TCACCAAGGT TTTCCCGACC
CGCTCCCACA CGGTTGCAGC CCAAGGCGGC ATTGCCGCTT CGCTCAACAA CATGACGCCA
GACTGCTGGC AGTGGCATCT TTACGATACC GTCAAAGGCT CGGACTGGCT GGGTGACGTG
GACGCCATGC AATATCTGGC CATGGAAGCG CCAAAGGCTG TCTATGAGCT GGAACATTAC
GGCGTGCCCT TCTCGCGTAA CGAAGAAGGC AAAATCTATC AGCGTCCGTT CGGCGGCCAT
ATGCAGAATT ACGGCGAAGG CCCGCCGGTA CAGCGCACTT GTGCTGCCGC CGACCGGACC
GGCCACGCCA TTCTGCATAC GCTTTACGGT CAATCCCTGA AGCATAATGC CGAATTCTTC
ATCGAATATT TCGCCCTCGA CCTGATCATG GCCGAGGATG GCCGTTGCAC CGGCGTCGTG
GCCTGGAACC TCGATGACGG CACGATCCAT CGCTTCTCCG CCAAGATGGT GGTGCTGGCG
ACCGGCGGTT ACGGCCGCGC CTATTTCTCG GCAACGTCGG CTCATACCTG CACCGGTGAT
GGCGGCGGCA TGATTGCCCG CGCCGGTCTG CCGCTTCAGG ACATGGAATT CGTTCAGTTC
CACCCGACCG GTATTTACGG TGCTGGCTGT CTGATCACCG AAGGCGCGCG CGGCGAAGGC
GGCTATCTGG TCAATTCCGA GGGTGAGCGT TTCATGGAAC GCTATGCCCC ATCGGCCAAG
GATCTTGCCT CGCGTGACGT GGTTTCGCGC TGCATGACTT TGGAAATCCG CGAGGGCCGC
GGCGTTGGCA AGAACAAGGA CCATATCTAC CTGCATCTCG ACCATCTCGA TCCCGCCGTT
CTGCATGAGC GCCTGCCGGG CATTTCCGAG AGCGCCAAGA TTTTTGCCGG CGTCGATGTG
ACCCGCGAAC CGATCCCGGT TCTGCCGACC GTTCACTACA ATATGGGTGG CATTCCGACC
AATTACTGGG GCGAAGTGCT GAACGCCGAT GCTGAAAACC CCGAGCGGAT CGCACCCGGC
CTGATGGCTG TCGGTGAAGC CGGTTGCGCT TCGGTGCATG GGGCCAATCG TCTTGGCTCC
AACTCACTGA TCGACCTCGT GGTGTTTGGC CGTGCTGCGG CCATCCGTGC CGCCGAGGTC
ATCGACCGGG TCTCGCCAAT TCCGGCGCTG AACGTCGCTG CCTGTGATAA GATCATGGAA
CGGTTTGACG CCATCCGCCA TTCCAGCGGC TCGACGCCAA CAGCCGTGCT GCGTGACAAG
ATGCAGCGCG CCATGCAGGA AGATGCTGCG GTGTTCCGCA CCCAGGAAGC CCTGGAAAGT
GGTTGCCGTC GGATCTCGGA AATCTGGAAG GAAATGCCCG ACATCAAGGT CACGGACCGG
TCGCTGGTGT GGAATTCCGA TCTGGTGGAA ACGCTGGAAC TGCACAATCT GATGGCCAAT
GCCATTACCA CGGTTTATGG CGCAGAAGCC CGCAAGGAAA GCCGTGGTTC GCATGCCCGC
GAGGATTTTG TTGACGGCCC TTATGGTGGT CGCGACGACG TCAACTGGCG CAAGCACACA
CTGGCCTGGG TCAATGAAGC CGGCGATGTG AAGCTGGATT ACCGTCCTGT ACACACCGAG
CTTCTGGCTG ATGGGATCGA TCCCAAGAAG ATCGAGCCCA AGGCCCGCGT TTATTGA
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| Protein sequence | MAATSSSSKA GPTINGRSYT YVDHAYDVVV VGAGGAGLRA TLGMAEQGFK TACITKVFPT
RSHTVAAQGG IAASLNNMTP DCWQWHLYDT VKGSDWLGDV DAMQYLAMEA PKAVYELEHY
GVPFSRNEEG KIYQRPFGGH MQNYGEGPPV QRTCAAADRT GHAILHTLYG QSLKHNAEFF
IEYFALDLIM AEDGRCTGVV AWNLDDGTIH RFSAKMVVLA TGGYGRAYFS ATSAHTCTGD
GGGMIARAGL PLQDMEFVQF HPTGIYGAGC LITEGARGEG GYLVNSEGER FMERYAPSAK
DLASRDVVSR CMTLEIREGR GVGKNKDHIY LHLDHLDPAV LHERLPGISE SAKIFAGVDV
TREPIPVLPT VHYNMGGIPT NYWGEVLNAD AENPERIAPG LMAVGEAGCA SVHGANRLGS
NSLIDLVVFG RAAAIRAAEV IDRVSPIPAL NVAACDKIME RFDAIRHSSG STPTAVLRDK
MQRAMQEDAA VFRTQEALES GCRRISEIWK EMPDIKVTDR SLVWNSDLVE TLELHNLMAN
AITTVYGAEA RKESRGSHAR EDFVDGPYGG RDDVNWRKHT LAWVNEAGDV KLDYRPVHTE
LLADGIDPKK IEPKARVY
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