Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4118 |
Symbol | rhtB |
ID | 7388911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 3473979 |
End bp | 3474620 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 643652819 |
Product | RhtB family transporter |
Protein accession | YP_002550992 |
Protein GI | 222150035 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1280] Putative threonine efflux protein |
TIGRFAM ID | [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATCCCT ATCTGTTTGA ACTCGCATCC CTGATGGCTA TTTTCGCCTT CGCTATCGTC TCTCCCGGTG CTGATCTGGC TATGGTCATG CGCCAATCCC TGGTACATGG ACGGCGTGAG GCGATCATCA CCAGTTTCGG TGTTGGTTCG TCGCTGATGT TTCATGTGAC CTACACCATT CTCGGCCTTG GCCTGATCAT TTCCCAGTCG ATCTACCTGT TCAATATCGT CAAATGGTGT GGTGTCGCCT ATCTGCTTTA CATCGGCGTA AAGTCTTTGC GGGCGGGTAA ATCCGATATG ACGGCGCAGC CGACTGTGGA GGCGGGCGAT CAAAAACGCC AGTCGATCTC CAAGTCCTTC TTTCTCGGTT TTGCAGCCAA TGCCCTCAAT CCGAAACCGG TGTTTTTCTT CCTGTCGATC TTCTCCACGG TGGTCAGCAT TCACACGCCG ATCGCGGTTA AGTTCGGGTA TGGCCTAGTG ATGGCGACCT GCCTGATCAC CTGGTTTGTC GGCGTCAGTA TTTTCATGAC GACGCCGAAA ATGCGTGCGG CCTTTTCACG CGCCAGCCAA TGGATCGACC GCATCAGCGG TGCAGTCTTC ATTGTGCTTG GTTTGAAGCT TGCGACGGAA AAGGCCAGTT AA
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Protein sequence | MHPYLFELAS LMAIFAFAIV SPGADLAMVM RQSLVHGRRE AIITSFGVGS SLMFHVTYTI LGLGLIISQS IYLFNIVKWC GVAYLLYIGV KSLRAGKSDM TAQPTVEAGD QKRQSISKSF FLGFAANALN PKPVFFFLSI FSTVVSIHTP IAVKFGYGLV MATCLITWFV GVSIFMTTPK MRAAFSRASQ WIDRISGAVF IVLGLKLATE KAS
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