| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4106 |
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| Symbol | atpD |
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| ID | 7388901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 3459826 |
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| End bp | 3461283 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643652809 |
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| Product | ATP synthase F1, beta subunit |
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| Protein accession | YP_002550982 |
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| Protein GI | 222150025 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.741978 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAGGG CAGCGACCCA GACATCTCCC GCAGCGGGCA AGGTGACCCA GGTCATCGGC
GCCGTCGTCG ATGTGAAATT CGACGGCGTC TTGCCGCCGA TCCTGAATGC GTTGGAAACA
GAAAACGGCG GCCATCGTCT GATTCTGGAA GTGGCGCAGC ATCTCGGTGA AAATGTGGTG
CGGACCATTG CCATGGACTC GACCGAAGGT CTGGTACGTG GTCAACCGGT TTCCGATACC
GGCGCTCCGA TCTCCGTGCC TGTCGGTGAC GAAACGCTCG GACGTATTCT GAACGTCATC
GGGGAACCGG TCGACGAACT TGGGCCGGTG ACGACGACTG CTCGTCGCGC GATTCACCAG
CCTGCTCCTG AGTATGTTGA GCAATCGACT GAATCTCAGA TTTTGGTGAC CGGCATCAAG
GTTGTTGACC TTCTCGCTCC TTACGCCAAG GGCGGTAAGA TCGGCCTGTT CGGCGGCGCG
GGCGTTGGCA AGACCGTTTT GATCATGGAA TTGATCAACA ACGTTGCTAA GGCACACGGC
GGCTACTCGG TGTTTGCTGG CGTGGGTGAA CGTACCCGCG AAGGCAATGA CCTGTACCAT
GAAATGATCG AATCCAAGGT GAACGTCGAC CCGCATGAAA ACGGTGGTTC TGCTGCTGGT
TCCAAGTGCG CCCTCGTTTA TGGCCAGATG AACGAGCCTC CGGGTGCGCG TGCGCGCGTG
GCCTTGACCG GTCTGACCAT CGCTGAAGAC TTCCGCGACA AGGGCCAGGA CGTTCTGTTC
TTCGTGGACA ACATCTTCCG CTTCACGCAG GCTGGTTCTG AAGTGTCGGC TCTTCTGGGT
CGTATTCCTT CGGCGGTTGG TTATCAGCCG ACACTGGCAA CCGACATGGG TGCCCTTCAG
GAACGCATCA CCACGACGAA CAAGGGCTCG ATTACCTCTG TTCAGGCGAT TTACGTTCCT
GCCGACGACT TGACCGACCC GGCTCCGGCA ACGTCGTTTG CCCACTTGGA TGCAACGACG
GTTCTGAACC GCTCGATCGC TGAAAAGGGT ATTTACCCGG CTGTTGACCC GCTCGACTCT
ACCTCGCGCA TGCTCGACCC GATGGTTGTC GGTGAAGAAC ATTACGAAGT GGCCCGTAAG
GTTCAGTCGA CTCTGCAGCG CTACAAGTCG CTCCAGGACA TCATCGCCAT CCTCGGGATG
GACGAACTGT CTGAAGACGA CAAGATTGCG GTTGCCCGCG CCCGTAAGAT CGAGCGCTTC
CTGTCGCAGC CGTTCCACGT TGCTGAAATC TTCACCGGTT CGCCAGGCAA GCTGGTGTCG
CTGGAAGACA CGATCAAGGG CTTCAAGGGC CTGGTCAATG GCGACTACGA CCATATGCCG
GAAGCCGCCT TCTACATGGT CGGCTCAATG GACGAAGCCA TCGAAAAGGC AAAGAAGTTG
GCAGCTGTTG CTGCCTGA
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| Protein sequence | MARAATQTSP AAGKVTQVIG AVVDVKFDGV LPPILNALET ENGGHRLILE VAQHLGENVV
RTIAMDSTEG LVRGQPVSDT GAPISVPVGD ETLGRILNVI GEPVDELGPV TTTARRAIHQ
PAPEYVEQST ESQILVTGIK VVDLLAPYAK GGKIGLFGGA GVGKTVLIME LINNVAKAHG
GYSVFAGVGE RTREGNDLYH EMIESKVNVD PHENGGSAAG SKCALVYGQM NEPPGARARV
ALTGLTIAED FRDKGQDVLF FVDNIFRFTQ AGSEVSALLG RIPSAVGYQP TLATDMGALQ
ERITTTNKGS ITSVQAIYVP ADDLTDPAPA TSFAHLDATT VLNRSIAEKG IYPAVDPLDS
TSRMLDPMVV GEEHYEVARK VQSTLQRYKS LQDIIAILGM DELSEDDKIA VARARKIERF
LSQPFHVAEI FTGSPGKLVS LEDTIKGFKG LVNGDYDHMP EAAFYMVGSM DEAIEKAKKL
AAVAA
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