| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4030 |
|---|
| Symbol | plsC |
|---|
| ID | 7388841 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 3393210 |
|---|
| End bp | 3394121 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643652748 |
|---|
| Product | 1-acyl-sn-glycerol-3-phosphate acyltransferase |
|---|
| Protein accession | YP_002550922 |
|---|
| Protein GI | 222149965 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0204] 1-acyl-sn-glycerol-3-phosphate acyltransferase |
|---|
| TIGRFAM ID | [TIGR00530] 1-acyl-sn-glycerol-3-phosphate acyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATCGCA GCAATCCTCC CAAAGCTAGT CGGACCTGCG ATGTCGAACC ATCTTCCTCT
TATTGGAAAA TTCGTATAGG CAGGGCCATC TGTCGGCGGA ATATCTTCAT GCTTGCTTTG
CGGTCCCATG TTTTCAACGT GCTGTTCTAT GCCTGCCTGA TCCTCTGGAT GGTCTTGGCC
GCGCCGATCT ATTTCATCTT GCCGCGCAAA ATAGCCTATT CCGTCCCCAA GACATGGGCG
CGATTCAGTC ATTGGCTGAT GAAAACCGTG GTCGGCACGA CATTCGAAAT TGAAGGCCTG
GAGAATATCC CGCACTCCGG CTACATCCTC GCGCCAAAGC ACCAATCCTT CTGGGATACC
TATGCGCTTC TGCCCTGGCT GGACGATCCG GTCTATATCC TCAAGCGGGA ATTGATGTGG
ATTCCGTTCT TCGGCTGGTA TGCCGCCAAG CAGAACATGA TCCCGGTCAA TCGCGGTGGA
CGGGGTAAAG AAATGGTCAA GGTCATGCAA CGTGCCGCCG TGGAAGTGCG CAACGGCCGT
CAATTGGTCA TCTATCCCGA GGGGACAAGA CGCCCGCCCG GCGCCGACCC TGAATATAAA
TTCGGCATCG CCCGGCTTTA CCGCGACCTC AAAGTGCCGG TCGTGCCGGT TGCCATGCAT
GCCGGCCTGT TCTGGCCGCG GCGCAGCCTG ATGCGCTATC CCGGGCATTA CAAGATTCGT
ATCCTTCCCC CCATCCAACC GGGAATGAAG CCCGATGCAT TTTTTGAAAC ATTGACCCGC
CAGCTGGAGA CGGCCAGCGA TGCACTGCTG CTGGAGGCCG CCCAGACCAA TCCGGATCTC
CCCATGCCGC CGACCGCCAA ACACCGTCTT GAAACCATGA GAGCGCAGGA ACAGGCCAAG
AACCCGTCAT AA
|
|---|
| Protein sequence | MHRSNPPKAS RTCDVEPSSS YWKIRIGRAI CRRNIFMLAL RSHVFNVLFY ACLILWMVLA
APIYFILPRK IAYSVPKTWA RFSHWLMKTV VGTTFEIEGL ENIPHSGYIL APKHQSFWDT
YALLPWLDDP VYILKRELMW IPFFGWYAAK QNMIPVNRGG RGKEMVKVMQ RAAVEVRNGR
QLVIYPEGTR RPPGADPEYK FGIARLYRDL KVPVVPVAMH AGLFWPRRSL MRYPGHYKIR
ILPPIQPGMK PDAFFETLTR QLETASDALL LEAAQTNPDL PMPPTAKHRL ETMRAQEQAK
NPS
|
|---|
| |