| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_4020 |
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| Symbol | lysA |
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| ID | 7387349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 3384158 |
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| End bp | 3385429 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652740 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_002550914 |
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| Protein GI | 222149957 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACCATT TCCAGTATCG CGATGGCATT CTCCATGCCG AGGATGTGTC CGTTCCAGAC
ATCGCCAAGG CGGTCGGCAC CCCCTTCTAC TGCTACTCCA CCGCAACGCT GGAGCGCCAT
TACCGGGTGT TTTCCGAGGC CTTCGACGGC GTCGATTCCA TGGTCTGCTA CGCGGTCAAA
GCCAATTCCA ACCAGGCGGT GCTGAAAACC CTTGGGCAAT TGGGTGCTGG CGTCGATGTG
GTCTCCGAAG GCGAATTGCG CCGGGCGCTG GCAGCTGGCA TTCCCCCCAG TCGCATCCTG
TTTTCAGGCG TCGGCAAGAC CCCGTCGGAA ATGGATCTCG GGTTGGAGGT CGGGATTTAC
TGTTTCAATG TCGAATCCGA ACCGGAACTG GACGTCCTCA ATCAAAGAGC GCTGAAAGCC
GGTAAAACGG CGCATGTCTC CTTCCGCATC AACCCGGATG TTGATGCTGG CACCCATGCG
AAGATTTCCA CCGGTCGGAA AGAAAACAAA TTCGGCATTT CCTATGAGCG CGCCCGCGCC
GTCTATGCCC GCGCCGCCAG CCTTGAAGGT ATCAAGGTCA CCGGTATCGA CATGCATATC
GGCAGCCAGA TCACCGATCT CCAGCCATTT GCCGAGGCCT TCAAGCTGCT GCGCGACCTG
GTGACCACGC TGCGGGCCGA AGGCCACACT ATCGATCACG TCGATGTCGG CGGTGGGCTT
GGGATTCCCT ACAAAGACGA CAACAATCCG CCGCCCGACC CGGCAGCCTA TGCAGCCATC
GTCAAGCAGC AATTGGCCTC GCTGGACTGC CGGATCGTCG CCGAGCCGGG CCGGCTGATC
GTTGGCAATG CCGGTATTCT CGTCACCGAA GTGATCTATG TGAAGGACGG TGGCAACAAG
ACCTTCGTCA TCGTCGATGC CGCCATGAAC GACCTGATCC GCCCGACGCT CTATGACGCC
CATCACGAGC TTCGTCCGGT GCTGCTGTCT GCGGCCAGCG CCCCGCGCAT CCGCGCCGAT
GTGGTCGGGC CGGTCTGCGA GACCGGCGAT TATCTGGCGC TCGACCGCGA AATGAGCATG
CCAAGGCCCG GCGACCTGAT CGCCATCGGC TCGGCAGGGG CCTACGGCGC TGTTCAATCG
AGCACGTATA ATACGAGACG ACTGGTGCCC GAAGTGCTCG TCAAGGGCGA CCAATTCCAC
GTGATCCGGC CAAGGCCGAG CTATGAGGAT ATGATCCGGT TGGACAGCCT GCCCGATTGG
CTGGCATCCT GA
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| Protein sequence | MNHFQYRDGI LHAEDVSVPD IAKAVGTPFY CYSTATLERH YRVFSEAFDG VDSMVCYAVK
ANSNQAVLKT LGQLGAGVDV VSEGELRRAL AAGIPPSRIL FSGVGKTPSE MDLGLEVGIY
CFNVESEPEL DVLNQRALKA GKTAHVSFRI NPDVDAGTHA KISTGRKENK FGISYERARA
VYARAASLEG IKVTGIDMHI GSQITDLQPF AEAFKLLRDL VTTLRAEGHT IDHVDVGGGL
GIPYKDDNNP PPDPAAYAAI VKQQLASLDC RIVAEPGRLI VGNAGILVTE VIYVKDGGNK
TFVIVDAAMN DLIRPTLYDA HHELRPVLLS AASAPRIRAD VVGPVCETGD YLALDREMSM
PRPGDLIAIG SAGAYGAVQS STYNTRRLVP EVLVKGDQFH VIRPRPSYED MIRLDSLPDW
LAS
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