Gene Avi_3919 details

Gene Information

• Locus tag: Avi_3919
• ID: 7387276
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3277376
• End bp: 3278071
• Gene Length: 696 bp
• Protein Length: 231 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643652660
• Product: transcriptional regulator GntR family
• Protein accession: YP_002550841
• Protein GI: 222149884
• COG category: [K] Transcription
• COG ID: [COG2186] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.375079
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGACCTC TGCAAAAAAC CAATCTGGCC GATGGGGCCG CCGAACGTAT TCGAAACGCG 
CTTAGCCGTG GGACGTGGCG GGTCGGCGAA AAATTGCCGA ACGAGCAAGG CCTGTCTGAA 
GCGCTGCATG TCAGCCGGGG CACGATCCGC GAAGCCGTGC GGGTTCTGGT GGCGCAGGGC 
CTGCTGGAAA CCCGCCAGGG CTCCGGCACC TATGTGATCA AAGACCGCAT CACCCCCGAA 
CCGCTGGACC TTGCCCGCCG CACCAGCCTG CGCGACCGGC TGGAGGCCCG GCTGGCACTG 
GATGTCGAGG GGGCAAGGCT GGCCGCCATC AGGGCGAGAC CGGCCACCAT CAGGCAATTA 
CACGCCCTGC TGGATCAGCG TGGCCATTCC GGTGCTGATC CCGACCGTAA CGCTTTTATC 
GCTCGCGATC TGGCCTTTCA CCGGGCGGTG ATCGCCGCAT CGGAAAACGC CGCCATGCTG 
GAGCTTTACG AGTTTTTCAC CCGCTCGATT ACCCAGACCA TTGAGGCGAC CACCGGCGGC 
CTGCTGCCGG AACCGGACCT TGACGCCCAC CGCGCCATTG TCGATGCCAT TGCCAGCGGC 
GATCCAGGCC AAGCAGACAG TGCGGTGCGC GCCTTCATGC AGCCGGTGCT TATCTTTCTC 
GATGACATTG CCTCCACTGA AAGCCTTAAC CGATGA 

 

Protein sequence

MRPLQKTNLA DGAAERIRNA LSRGTWRVGE KLPNEQGLSE ALHVSRGTIR EAVRVLVAQG 
LLETRQGSGT YVIKDRITPE PLDLARRTSL RDRLEARLAL DVEGARLAAI RARPATIRQL 
HALLDQRGHS GADPDRNAFI ARDLAFHRAV IAASENAAML ELYEFFTRSI TQTIEATTGG 
LLPEPDLDAH RAIVDAIASG DPGQADSAVR AFMQPVLIFL DDIASTESLN R