Gene Avi_3821 details

Gene Information

• Locus tag: Avi_3821
• ID: 7388514
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3174425
• End bp: 3175123
• Gene Length: 699 bp
• Protein Length: 232 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643652581
• Product: hypothetical protein
• Protein accession: YP_002550762
• Protein GI: 222149805
• COG category: [K] Transcription
• COG ID: [COG2378] Predicted transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCGGT CTGAGCGTCT TCTTTCATTG CTGCAAATTC TGCGGCGCTA TCGCCGCCCG 
GTGACCGGAC AGGTGTTGGC CGAAGAACTG GGCGTCTCCA TCCGCACGCT CTACCGCGAC 
ATTGCCACGC TCCAGAGCCA GGGCGCCGGT ATCGAGGGAG AGGCCGGTCT TGGCTATGTG 
CTGCGTCCGG GCTACATGCT GCCACCACTG ATGTTCAGCC CACAGGAAAT CGAAGCGCTG 
GTGCTTGGTT CCCGCTTTGT CGCACAACGA ACCGACCAGC ATCTGGCCTT TGCCGCCCGC 
GACGCGCTTG CAAAAATCAC CGCTGTGCTG CCCGACGAAC TTCGCCGCAG CCTTGAGGAT 
AATAGCCTGC TGGTCGGACC AAGCGATAAA GCGGCGGGGC AGCTTCCGGC CGATCTCAGC 
CCATATCGGC AAGCGATCCG CGCAGAACAT GTGCTGCATA TCGTCTACCG AGATGAAAAA 
GGGGTGGCGA GCAACCGCGA TATCTGGCCC TTCGCCCTGA CATTCTTTGA AGGCGCACGG 
ATCTTGCTGG CATGGTGTAC GCTGCGGGAA GATTTCAGAC ATTTTCGCTG CGACCGCATT 
GGGGAGTGCA AGACACTCGC TCTGCGCTAC CCGGTGCGTC GAGCCAGCCT GCTGAAACGA 
TGGCGCGAGC ATAACAGCAT TCCAGATCGG ATTTTTTAG 

 

Protein sequence

MTRSERLLSL LQILRRYRRP VTGQVLAEEL GVSIRTLYRD IATLQSQGAG IEGEAGLGYV 
LRPGYMLPPL MFSPQEIEAL VLGSRFVAQR TDQHLAFAAR DALAKITAVL PDELRRSLED 
NSLLVGPSDK AAGQLPADLS PYRQAIRAEH VLHIVYRDEK GVASNRDIWP FALTFFEGAR 
ILLAWCTLRE DFRHFRCDRI GECKTLALRY PVRRASLLKR WREHNSIPDR IF