Gene Avi_3729 details

Gene Information

• Locus tag: Avi_3729
• ID: 7388197
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3092635
• End bp: 3094569
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643652512
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002550694
• Protein GI: 222149737
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.554142
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATTTC TCGACAATCT GAAAATTAAA ACGAAGATTT TGTCTGTTGT GGTTTCAATC 
TGTGCATTGG GCATTGGCGC TTCTGTCATG CTGTCGCAAG GCTTGAATGC GGTTGATAAG 
GAATATTCCG CTTTTATTGA TCAGGACGCA GGCTCGCTGA TGATGGTGGC GCGTTCAAGC 
CAGAGGCTGA TGGCACTCGG CTATGACGCC TACCAAATCT TGGTTTATGA CGATTCAAGT 
CCGGAAATCG TCAGGGCGAA AAAGGACTAT GATGAGAGCG TTAAGCGCAT TATCGCCATG 
ATCGATGAGG CAATCGCCCT TGATCCTGCG AAGGCCGACC GGCTCGCTGC AATTCGTACA 
CGGTATGAGG CGATCATCAC GATAACATCC AAAGTCATTG ACCTGGATGC TAAAAAACAA 
GATACCGAAG CCCGCGACGA ATTAAGGCAG GCAGACAAGC TGATCGCCGA GACAGCTGAC 
GAGACCCGCC GATGGGTGGT CGATGGTGCA AAAGAACTGT CTGATAAAAG TACGTTGATC 
TCGAATGAGA CGCGCAATAC AATTATTGCC ACGCTTGGCG GCCTGTTTGT GGCGTTCATC 
CTGGCGATTT TTGCCGCTTT GTGGATCATC TCCCATGGTA TTACCCGACC GATCGAACGG 
TTGCGGCTGC GTATGATTGC TCTTGCCAAG GGCGAAACGC GCGCGGAAAT CGATGGCGCC 
GGACGCGGCG ATGAACTCGG GCAGATGGCC GCCGCCGTGG CGGTGTTCCG AGACAATGCG 
CTGGACCGTG AGCGTCTTGA AGCCGAGGCC GAGGCCAGCC GTGGCTTGTC GGAAAAGGAA 
CGCGCCGAGC GCGACGCGCA ACGAGCCAAG GATGCCGCCG ACACCAAATT TGCTGTGGAT 
GCTCTGGCAG AGGGTCTGAC GCGCCTGGCT GATGGGGATG TCAGCTACCG TATTGCCGTG 
CCATTCGTGG CTGGCCTTGA TGGCTTGCGG TCGAATTTCA ACAGCTCTGT CCAGAAGTTG 
CAGCAGGCGC TGGTGACCGT CAGGCAGAAT GCGCGTGGCA TAGATGCAGG CGCTAATGAA 
ATCCGCTCTG CCGCTGACGA TCTTTCGCAT CGGACGGAAC AGCAGGCGGC TTCCGTGGAA 
GAAACGGCAG CGGCACTGGA GCAGATTACC ACGACGGTCA AGGATTCGAC CCGGCGCGCC 
GAAGAAGCTG GCATTCTGGT GTCCAAAACA CGCGATGGTG CGGAACGCTC CGGCGATGTT 
GTGCGCAAGG CGGTTGCCGC CATGCAGGAG ATCGAAAGAT CCTCTGGCGA AATCAGCAAT 
ATCATTGGTG TTATCGATGA GATCGCTTTT CAGACCAATC TTCTGGCGCT GAATGCTGGT 
GTTGAGGCCG CCCGTGCCGG TGAAGCTGGC AAGGGTTTTG CCGTGGTGGC GCAAGAGGTG 
CGCGAACTGG CGCAACGCTC CGCCAATGCG GCAAAGGACA TCAAGGGTCT GATCGTCTCT 
TCAGGCCAGC AGGTGCAGGC CGGGGTGCAG CTGGTGGCTG AAACCGGCTC TTCGCTCGAA 
ACCATTGTCG GTGAGGTCCA GGAAATCAAC CGGCATGTCA CCGCGATAGT CGAGGCCGCA 
CGCGAGCAAT CGGTCGGACT TCAGGAGATC AATACGGCAG TCAATACCAT GGACCAGGGT 
ACGCAGCAGA ATGCTGCCAT GGTGGAGCAG ACAACGGCGG CAAGCCACAG CCTTGCCAAA 
GAGGCTGCAA CGTTGAGCGA CCTGCTGTCG CGCTTCAAGC TGGAAGATCA TGGCAAGGTA 
GTTGCGTTCG AGCAGACGAA TGACGTTTCC GCGTCTCGCC CCGCACCGTC GCCTGCCCGG 
AAATTGACGG AAAAGCTCCG GGGCGCCTTT CATGGATCGG CTGCCGTAAA AGAGAAGGAT 
TGGCAGGATT TTTGA 

 

Protein sequence

MSFLDNLKIK TKILSVVVSI CALGIGASVM LSQGLNAVDK EYSAFIDQDA GSLMMVARSS 
QRLMALGYDA YQILVYDDSS PEIVRAKKDY DESVKRIIAM IDEAIALDPA KADRLAAIRT 
RYEAIITITS KVIDLDAKKQ DTEARDELRQ ADKLIAETAD ETRRWVVDGA KELSDKSTLI 
SNETRNTIIA TLGGLFVAFI LAIFAALWII SHGITRPIER LRLRMIALAK GETRAEIDGA 
GRGDELGQMA AAVAVFRDNA LDRERLEAEA EASRGLSEKE RAERDAQRAK DAADTKFAVD 
ALAEGLTRLA DGDVSYRIAV PFVAGLDGLR SNFNSSVQKL QQALVTVRQN ARGIDAGANE 
IRSAADDLSH RTEQQAASVE ETAAALEQIT TTVKDSTRRA EEAGILVSKT RDGAERSGDV 
VRKAVAAMQE IERSSGEISN IIGVIDEIAF QTNLLALNAG VEAARAGEAG KGFAVVAQEV 
RELAQRSANA AKDIKGLIVS SGQQVQAGVQ LVAETGSSLE TIVGEVQEIN RHVTAIVEAA 
REQSVGLQEI NTAVNTMDQG TQQNAAMVEQ TTAASHSLAK EAATLSDLLS RFKLEDHGKV 
VAFEQTNDVS ASRPAPSPAR KLTEKLRGAF HGSAAVKEKD WQDF