Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3720 |
Symbol | |
ID | 7388190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3084089 |
End bp | 3085123 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652505 |
Product | hypothetical protein |
Protein accession | YP_002550687 |
Protein GI | 222149730 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCGGCT TCGATATTCT GGTTATTGCC CTGGTGGGCT TCGTCATCCT GGTGCTGATT GCCGGGGTCA AGACCGTGCC GCAGGGCTTT CGCTATACGG TGGAACGTTT CGGACGCTAT ACCCGCACGC TGGAACCGGG CCTCAACATC ATCACACCCT TTATTGAGAC CATCGGTGCC AGGATGAACG TGATGGAACA GGTGCTGGAT GTTCCGACCC AGGAAGTCAT CACCAAGGAT AATGCCAGCG TCTCCGCCGA TGCCGTGGCC TTTTATCAGG TCCTGAACGC CGCCGAGGCC GCCTATCAGG TTGCCAATCT GGAAAACGCC ATTCTCAACC TGACCATGAC CAATATCCGC TCGGTCATGG GCTCGATGGA TCTCGATGAA CTGCTGTCCA ACCGCGAGGT CATCAACGAC CGGCTGCTGC GGGTGGTGGA TGAAGCCGTG CGCCCCTGGG GCATCAAGGT CACCCGAGTC GAGATCAAGG ATATCCAGCC GCCCAAGGAT CTGGTCGATG CCATGGGCCG CCAGATGAAA GCCGAGCGTG AAAAACGCGC CCTGGTGCTG GAAGCTGAAG GCTTCCGCAA TGCCCAGATT CTGCGGGCCG AAGGCGCCAA GCAATCCGCC ATCCTCCAGG CCGAAGGCCA GAGGGAAGCC GCCTATCGCG AGGCCGAGGC CCGCGAACGT TTGGCCGAAG CGGAAGCCAA GGCGACGGCC CTGGTCTCCG CAGCAATTGC CGCCGGTGAT GTCCAGGCCA TCAACTATTT CGTCGCCCAG AAATATACCG AGGCGATGAC CGCAATCGGC ACCGCCTCCA ACTCGAAAAT CGTGCTGATG CCGATGGAAG CGTCATCGCT GATCGGCTCA CTGAGCGGCA TTGGCGCCAT CGCCCGCGAA GTGTTCGGAG GCGATGCGCC GCAGGCGAGT TCCAACCCGG CTCGTGCCTC TGGCTCACCA GCCAGAAGCG TTCCGAAAAC CACCACAGTC AGCACTACGC CCGCGATCAA TCCCTTCGCC AAGTCGGAGG AATAA
|
Protein sequence | MSGFDILVIA LVGFVILVLI AGVKTVPQGF RYTVERFGRY TRTLEPGLNI ITPFIETIGA RMNVMEQVLD VPTQEVITKD NASVSADAVA FYQVLNAAEA AYQVANLENA ILNLTMTNIR SVMGSMDLDE LLSNREVIND RLLRVVDEAV RPWGIKVTRV EIKDIQPPKD LVDAMGRQMK AEREKRALVL EAEGFRNAQI LRAEGAKQSA ILQAEGQREA AYREAEARER LAEAEAKATA LVSAAIAAGD VQAINYFVAQ KYTEAMTAIG TASNSKIVLM PMEASSLIGS LSGIGAIARE VFGGDAPQAS SNPARASGSP ARSVPKTTTV STTPAINPFA KSEE
|
| |