Gene Avi_3702 details

Gene Information

• Locus tag: Avi_3702
• Symbol: pepF
• ID: 7388176
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3066232
• End bp: 3068091
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643652491
• Product: oligoendopeptidase F
• Protein accession: YP_002550673
• Protein GI: 222149716
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1164] Oligoendopeptidase F
• TIGRFAM ID: [TIGR02290] oligoendopeptidase, pepF/M3 family

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTTTCA GCCCCGTTAA CCAGACCCGC CTTCCGGCAG CCGAATCCGC CAGCGTACCA 
GCGCACGGCC AAGGCCTCGG CACGCTGCCC GAATGGCAGC TCACCGATCT TTATCCGGCC 
CCCTCCTCGG ATCTCTTCAA GGCCGACCTC GCCAAGGCCA GCGAAATGAG CCTGGCCTTC 
GAGACCAAAT GGAAGGGGCG GCTGGAAGAT GCCGCCGCCA AGGACGCGGA TCAGGGCCTG 
GGAGCCGCGC TGAAGGAATT CGAAGAACTC GAAGACCTAC TCGGCAAGAT CGGCTCCTAT 
GCCGGTCTCT ATTATTATAG TGAGATGACC AAGCCGGAAA ACGGCAAATT CTTCGGCGAT 
GTACAAGCCA GGCTGACGGA GCTTGCCGCC CATCTGCTGT TTTTCACGCT GGAGCTGAAT 
CGGCTGGACG ATGCGGTGAT CGATGCTGCC ATTGCCCGCG ATCCGGCCAC CGCCCATTAC 
AAGCCCTGGC TGATTGATCT CAGGCAAGAC AAGCCCTACC AGCTGGATGA CAAGCTCGAG 
CAATTGTTTC TGGAAAAATC CCAGACCGGT TCGGCGGCCT TCAACCGGTT GTTCGACGAG 
ACCCTGGCAA GCCTGCGGTT TGAGATTGAC GGCGAACAGC TGACGCTGGA ACCGGTTCTG 
ACCATGTTGC AGGAGGCCGA TCCGGCCTTG CGCGAAAAGG CGGCCATGGC GCTGTCGAAG 
ACCTTCAAGG ACAATATCCG GATTTTCGTG CTGGTCACCA ATACCTTGGC CAAGGACAAG 
GAAATTTCCG ATCGCTGGCG CGGCTTTGCC GACATTGCCG ATAGCCGCCA CCTGTCCAAC 
CGGGTGGAGC GTCCGGTGGT CGATGCGCTG GCGGCTGCGG TGCGCGATGC CTATCCGCGC 
CTGTCGCACC GCTATTACAA GATGAAAGCC AAGTGGCTGG GCATGGAGCA GATGAATTTC 
TGGGACCGCA ACGCCCCTCT GCCCGACAGT ATCGACCGGA TCATTCCCTG GGACGAAGCC 
CGCCAGACCG TGCTGTCGGC CTATGGCGGC TTTGCGCCTG ATATGGCCGA AATCGCTGGT 
CGCTTTTTTG ATGGCGGCTG GATCGATGCG CCCGCCCGCC CTGGCAAGGC GCCGGGCGCC 
TTTGCCCATC CGACCGTGCC GTCTGCCCAT CCCTATGTTT TGGTCAATTA CCTCGGCAAG 
CCGCGCGACG TGATGACGCT GGCCCATGAA CTGGGCCACG GCGTGCATCA GGTTCTCGCT 
GGCGAACAGG GCGCGCTGAT GTGCCAGACG CCGCTGACGC TGGCCGAGAC CGCCTCGGTA 
TTCGGCGAAA TGCTGACCTT CCGGGCGCTT CTGGAAAAGG CCACGGATGC GCGTGAGCGC 
AAGGCCATGC TGGCCCAGAA AGTCGAGGAC ATGATCAACA CGGTCGTGCG CCAGATCGCT 
TTCTACGAAT TCGAGCGCAA GCTGCACACC GCCCGCAAGG AGGGCGAGTT GACGGCGGAA 
AAGATTGGCG AACTGTGGCT ATCGGTGCAG GAAGAGAGCC TTGGACCGGC CATCAAAGTG 
TCCGAGGGCT ATGAGACCTG GTGGGCCTAT ATCCCCCATT TCATCCATTC GCCTTTCTAT 
GTCTATGCCT ATGCCTTCGG CGATTGCCTG GTCAATTCGC TCTATGCCGT CTACCAGAAT 
GCCGAACAGG GCTTCCAGCA GAAGTATTTC GACCTGTTGA AGGCTGGCGG CAGCAAGCAT 
CATTCCGAAC TTCTCGCACC GTTCGGTCTG GATGCCACCG ACCCGTCCTT CTGGGCCAAG 
GGTCTATCGA TGATCGAAGG GTTGATCGAC GAGCTGGAAG CGCTTGACGC CAAAGCCTGA 

 

Protein sequence

MPFSPVNQTR LPAAESASVP AHGQGLGTLP EWQLTDLYPA PSSDLFKADL AKASEMSLAF 
ETKWKGRLED AAAKDADQGL GAALKEFEEL EDLLGKIGSY AGLYYYSEMT KPENGKFFGD 
VQARLTELAA HLLFFTLELN RLDDAVIDAA IARDPATAHY KPWLIDLRQD KPYQLDDKLE 
QLFLEKSQTG SAAFNRLFDE TLASLRFEID GEQLTLEPVL TMLQEADPAL REKAAMALSK 
TFKDNIRIFV LVTNTLAKDK EISDRWRGFA DIADSRHLSN RVERPVVDAL AAAVRDAYPR 
LSHRYYKMKA KWLGMEQMNF WDRNAPLPDS IDRIIPWDEA RQTVLSAYGG FAPDMAEIAG 
RFFDGGWIDA PARPGKAPGA FAHPTVPSAH PYVLVNYLGK PRDVMTLAHE LGHGVHQVLA 
GEQGALMCQT PLTLAETASV FGEMLTFRAL LEKATDARER KAMLAQKVED MINTVVRQIA 
FYEFERKLHT ARKEGELTAE KIGELWLSVQ EESLGPAIKV SEGYETWWAY IPHFIHSPFY 
VYAYAFGDCL VNSLYAVYQN AEQGFQQKYF DLLKAGGSKH HSELLAPFGL DATDPSFWAK 
GLSMIEGLID ELEALDAKA