| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3595 |
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| Symbol | serA |
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| ID | 7388022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2990219 |
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| End bp | 2991814 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643652420 |
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| Product | D-3-phosphoglycerate dehydrogenase |
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| Protein accession | YP_002550602 |
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| Protein GI | 222149645 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.86096 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCTC GCGTTCTCGT CTCTGATGAA TTGTCAGAAA CCGCCGTCCA GATTTTCCGC
GATCGCGGCG TTGAAGTGGA TTTCCAGCCG CAACTCGGCA AGGATAAAGA TAAACTGGCC
GAGATCATCG GCAATTACGA TGGTCTGGCC ATCCGTTCGG CCACCAAGGC CACGGAAAAG
CTGATTGCTG CCGCCACCAA TCTGAAAGTA ATTGGTCGCG CTGGTATCGG CGTCGATAAT
GTTGATATTC CGGCTGCCTC GCGCCGTGGT ATCATTGTGA TGAACACGCC GTTCGGCAAT
TCCATCACCA CGGCTGAACA CGCGATTGCA CTGATGTTTG CCGTTGCCCG TCAGCTTCCT
GCTGCCGATG CCTCAACACA GGCTGGCAAG TGGGAAAAGT CGAAGTTCAT GGGTGTTGAA
ATCACCGGCA AGGTGCTGGG TGTGATCGGC GCTGGCAACA TCGGCGGTAT TGTCTGCAAG
AAGGCCATCG GTCTGGGCAT GCATGTCATC GCTTACGACC CCTTCCTGTC TACGGAGCGC
GCGCAGGAAA TGGGCGTGAA GAAGGTTGAG CTGGACGAGC TGTTGGCTCA GGCTGATTTC
ATCACCCTGC ACGTGCCCAT GACCGACAAG ACCCGTGGCA TTCTCGGCAA AGAAAACCTT
GCCAAGACCA AGCCCGGCGT TCGCATCATC AACTGCGCCC GTGGTGGTCT GGTGGATGAG
GCAGCTTTGG CCGAAGCCAT CAAGTCTGGC CATGTTGCCG GTGCTGGTTT CGACGTGTTC
GAAGTCGAGC CTGCCAAGGA AAGCCCGCTG TTTGGCCTGC CAAACGTGGT TTGCACCCCG
CATCTGGGCG CATCCACCAC CGAAGCACAG GAAAATGTTG CTTTGCAGGT GGCCGAGCAG
ATGTCGGATT ACCTCGTCAA TGGTGCCGTT TCCAACGCCA TCAACATGCC GTCGATCACG
GCTGAAGAAG CACCGCTTTT GAAGCCGTTC ATTCGGTTGG CTGATGTTCT CGGTGCTTTC
GTCGGCCAGG TCACAGATGG CGCGATCAAG GAAATTGAAA TCCTCTATGA TGGCCAGACG
GCCACCATGA ACACCAAGGC GCTGACGTCT GCTCTACTGG CAGGCCTGAT CCGTGCCCAG
GTTTCGGATG TCAACATGGT GTCGGCACCG ATCATGATCA AGGAAAAGGG CATTGTCCTC
TCCGAAGTCA AGCGCGACAA GACCGGCGTT TACGACGGTT ACATCAAGCT GACCGTGACC
ACCGAAAAGC AGACCCGCTC GATTGCCGGT ACAGTGTTCT CGGATGGCAA GCCGCGCTTC
ATCCAGATCA AGGGCATCAA TCTCGACGCC GATGTCGGTC CGCACATGAT CTACATTTCC
AACACCGACG TTCCCGGCAT GATCGGCTTC ATGGGCACTA CGCTCGGCAA CGCTGGCGTC
AACATCGCCA ACTTCCAGCT GGGCCGCGAA AAGGAATCCG GCGACGCGAT TGCGTTGCTC
TATGTCGATG GCCCGGTCGA ACAGACTGTG CTCGATCAGC TGACCGCCAA TGCGGCGATC
AAGCAGGCCC GGCTTCTGAC ATTTGCGGTC GAATAA
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| Protein sequence | MAPRVLVSDE LSETAVQIFR DRGVEVDFQP QLGKDKDKLA EIIGNYDGLA IRSATKATEK
LIAAATNLKV IGRAGIGVDN VDIPAASRRG IIVMNTPFGN SITTAEHAIA LMFAVARQLP
AADASTQAGK WEKSKFMGVE ITGKVLGVIG AGNIGGIVCK KAIGLGMHVI AYDPFLSTER
AQEMGVKKVE LDELLAQADF ITLHVPMTDK TRGILGKENL AKTKPGVRII NCARGGLVDE
AALAEAIKSG HVAGAGFDVF EVEPAKESPL FGLPNVVCTP HLGASTTEAQ ENVALQVAEQ
MSDYLVNGAV SNAINMPSIT AEEAPLLKPF IRLADVLGAF VGQVTDGAIK EIEILYDGQT
ATMNTKALTS ALLAGLIRAQ VSDVNMVSAP IMIKEKGIVL SEVKRDKTGV YDGYIKLTVT
TEKQTRSIAG TVFSDGKPRF IQIKGINLDA DVGPHMIYIS NTDVPGMIGF MGTTLGNAGV
NIANFQLGRE KESGDAIALL YVDGPVEQTV LDQLTANAAI KQARLLTFAV E
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