Gene Avi_3542 details

Gene Information

• Locus tag: Avi_3542
• ID: 7388808
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 2936639
• End bp: 2938786
• Gene Length: 2148 bp
• Protein Length: 715 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643652376
• Product: hypothetical protein
• Protein accession: YP_002550559
• Protein GI: 222149602

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.652953
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGATT TCGTAGCAGT TATTCGGCGC GCCGTTGATG GCCTGTCGAA CAATACCCCG 
GAAATGCGCG TAAAGGTGTA TGAGAAGGCT CGTGGCGCAG TGATGCGGCA GCTGGACAAT 
ATGACACCCA AGCCGTCGGA AGACATGCTG CGCCGCCAGC TGGACAAGCT CGACGCCGCG 
ATTGCCGAGG TCGAGGCAGA TTATGCAGAG GCTCTTCCTG CGGTGGAAGA GGATGTCTAT 
GAGCCGGAGC CGGTTTATGA ACCAGCACCG GCTTATGAAC CTGAGCCGGA ACCAGAACCC 
GTTTACCATG AACCGGCGCC TGTTGAGGAA CCGGCGCATG AGCCCGAATA CGTGCACCGG 
CCAGAACCTG TTCATGAGCC TGAGCCGGCT TATGTTCCTG CGCCTGCCCC AGCACCTGTC 
TATGTGCCTG AACCAGATCC TGAGCCGGTT TATGAACCGG AACCGGAGTC TTATAAGCCA 
GAACCGGCGC GCATTCCGCC TGCTATTTGG GAGAATGAAG AGCCTGTCCT GCCAGCCGTG 
TCTTCTGCGC CCGCGGCCCC AGCGCCAGCC GTAAAGCCTT CTGCGCCACA GAAACATTCG 
ATGGACGAAT GGCTGGAAAG CCATTTGGAG CCGACGCCAG CTCCGCTTGC ACCTGTCCAT 
TCCTTTGAAG CACAGCCGCA GTCGCGCCAG GAAGAGGCAG AAAAGCCCGC AGTCTACCCC 
TCCATTCCAC CGGCACGCCA GCCGGTGTTC GATGAAGCCG AGGCGCTGGG CGCTTTCGAC 
GCTTTCGTGC GCGACAACAA GCAGCCTGCG GCGCAGGGTG GCTCCTTCTC GCAAGCTGGT 
CATGAAGATC CGAAGGATCT TCTGGACTGG AGCGACAAGC ATCAGAATAC CAGCTTCGGC 
ACGCCTGCCG GCCAGGAATC CGGAAACGAT GAAAAGGCCG TTCGCAACGG AGCTTCTGCC 
AGCAAGGCAG GCGAAGATCC TGCCTGGTTC GATGATTTCG TCGCTGCACA GCCTGTGCCA 
CCGGCGGCAG CTAAAAAGCA ACAGCGCGCC GCCGCGCCAG ACCGAAGCAA TTCCTCGGAA 
GACATGGCAG CCGTGCTGGC AAAGGCCAAC AGGAAGGCTG GGCTGCGTAC CAAGAAATCC 
CGCCGGACCG CGCCTTACAT CATCACTGGT GTGCTGATCC TGCTGATCGG CGGCGGTGGC 
TACTACGCCT ATGCTCATCG TGACAATCTG CCGGGTGCCA TCGCCGGGTT GAAGCAGACC 
GTTACAGGAT TGTTTGCCTC GAAGGACTCT ACACCAGCAT CCGCACCGTC TTCGCAGACG 
GGCAGCGCGG ATGCCGGAAA GCCGGCGACC GTTCCGGCAT CAACCGGCGA TGCCGGGGCT 
GCGGGGCAGA AATTCACCCA GAAGCTGATG CCTGATGGTA CGGAAGTGGA TGAGGGGGCC 
TCAAACGCTG CGGCCAATAG CGGCGAGGGC CGTTCGGTGG CCCAGCAGAA TGGCGGGGCC 
AATCCGGCAG CGCCAGTGTC TGGCGGTGCG GCCAGTGCAC CAGCCACCAC CACGCCTGTG 
CAGGGTGCGC CGTTTACCGT GCCGGAAAAT GGCCAGAAGG CCTATCTCTA CGAAGAGCGT 
CTCGGCCAGA CGACGCCGAC CACCGTGCAG GGCTATATTG TCTGGGAAGC CCGACGTGAG 
ACGGGCGACA GCGGCAAGCC GGAACCGGAA ATCCAAGGCA AGCTGACGAT CCCTGAGCGG 
GGGCTGACAG CGCTGATTAC CTTCAAGCGC AATACCGACA GCTCGCTTCC CGCCAGCCAC 
CTGATGGAAA TCGTCTTCTC GGTGCCGCAG AATTTTGAGG GCGGCGGCAT AGACAGTGTC 
CAGCGCGTTG CCATGAAAAC CAGCGAGCAG GATCGCGGCG ACCCGATCGT GGCGGTGCCT 
GCCAAGATCA CCGACGACAC GTTCATGATC GCCTTCAACG ATTTTGCCGA AGTGGTGGCC 
CGCAATGTCG ATCTGTTGCG CAGCCGTGAC TGGATCGACA TTCCCGTCAC CTATCGCAAC 
GGCCGCCGCG CGCTGATTAC CCTCGACAAG GGGGTGGCTG GCAAGCCGAT CTTCGATAGC 
GTCATCAAGG AATGGGCGGC GCTCGGCAAC AATCGCAGCG GCGGGTAA 

 

Protein sequence

MADFVAVIRR AVDGLSNNTP EMRVKVYEKA RGAVMRQLDN MTPKPSEDML RRQLDKLDAA 
IAEVEADYAE ALPAVEEDVY EPEPVYEPAP AYEPEPEPEP VYHEPAPVEE PAHEPEYVHR 
PEPVHEPEPA YVPAPAPAPV YVPEPDPEPV YEPEPESYKP EPARIPPAIW ENEEPVLPAV 
SSAPAAPAPA VKPSAPQKHS MDEWLESHLE PTPAPLAPVH SFEAQPQSRQ EEAEKPAVYP 
SIPPARQPVF DEAEALGAFD AFVRDNKQPA AQGGSFSQAG HEDPKDLLDW SDKHQNTSFG 
TPAGQESGND EKAVRNGASA SKAGEDPAWF DDFVAAQPVP PAAAKKQQRA AAPDRSNSSE 
DMAAVLAKAN RKAGLRTKKS RRTAPYIITG VLILLIGGGG YYAYAHRDNL PGAIAGLKQT 
VTGLFASKDS TPASAPSSQT GSADAGKPAT VPASTGDAGA AGQKFTQKLM PDGTEVDEGA 
SNAAANSGEG RSVAQQNGGA NPAAPVSGGA ASAPATTTPV QGAPFTVPEN GQKAYLYEER 
LGQTTPTTVQ GYIVWEARRE TGDSGKPEPE IQGKLTIPER GLTALITFKR NTDSSLPASH 
LMEIVFSVPQ NFEGGGIDSV QRVAMKTSEQ DRGDPIVAVP AKITDDTFMI AFNDFAEVVA 
RNVDLLRSRD WIDIPVTYRN GRRALITLDK GVAGKPIFDS VIKEWAALGN NRSGG