| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3536 |
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| Symbol | rluD |
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| ID | 7388802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2929463 |
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| End bp | 2930491 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643652370 |
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| Product | ribosomal large subunit pseudouridine synthase RluD subfamily |
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| Protein accession | YP_002550553 |
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| Protein GI | 222149596 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.618363 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGACC CCTTTAAACA AGCAGGCGAG CCAAGGAAAG AGCTGATTGC CGGTGAGGAC
GCCGAAGGCC GTCTGGATGC CTGGCTGGCG GCAAGCCTGG GCGGCGACCT GTCGCGCAAC
CGGGTGAAAG CCCTGATCGA ACAGGGTGCG GTCTTCGTCA ATGGCACAGC CGTTACCGAG
CCGAAGCGCA AGATCAAGCC CGGCGACCAG CTGGTGATCG CCATGCCGGA GCCGGAAGAC
CCCGAACCCA AGGGCGAGGA TATTCCACTC ACCGTGCTCT ACGAGGACAA GGACCTGATC
GTGCTGTCAA AGCCCGCCGG TCTGGTGGTG CATCCGGGTG CTGGCAACTG GACCGGCACG
CTGGTCAATG CGCTGATCCA CCATTGCGGC GACAGTCTCT CCGGCATTGG CGGGGTGAAG
CGTCCCGGCA TCGTCCACCG GCTGGATAAG GAAACCTCCG GCGTCATGGT TGTCGCCAAG
AATGACATCG CCCACCGGCA TCTGGCCGAC CAGTTTGCCG ACCATGGCCG CAGCGGCCCG
CTGGAACGGG CCTATCAAGC ACTCGTCTGG GGCCGTCCGC GGGGGCTGCG CGGCACGATT
GACGCAGCCC TTGGCCGGGC TGGCGACCGC ACCAAGCGCA CCGTCAAGCG TGAGGATACC
GATGACGCCC GCGAAGCCAT CACCCATTAC CAGGTGATGG AGCGTTATGG TGAAAAGCCG
GATGCTACCT GCCTCGCCTC GCTGGTCGAA TGCCGGCTGG AAACCGGCCG CACCCACCAG
ATCCGGGTGC ATATGGCCCA TATCGGCCAT CCGCTGATCG GTGATCCCGA ATATGGCGCG
GCCTTCAAAA CCAAGGCCAA CCTGCTACCA GACGCGGCCA AGGCCATCGT CACTAACTTC
CACCGCCAGG CCCTGCATGC CTATCTTCTG GCGTTCGAAC ACCCGACCAC CGGCGACGTC
ATGCACTTCG CAGCGCCCAT CCCTGACGAC ATGGAAACAA TTATCCGGGC GCTGCGCGAT
ATCGCATGA
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| Protein sequence | MTDPFKQAGE PRKELIAGED AEGRLDAWLA ASLGGDLSRN RVKALIEQGA VFVNGTAVTE
PKRKIKPGDQ LVIAMPEPED PEPKGEDIPL TVLYEDKDLI VLSKPAGLVV HPGAGNWTGT
LVNALIHHCG DSLSGIGGVK RPGIVHRLDK ETSGVMVVAK NDIAHRHLAD QFADHGRSGP
LERAYQALVW GRPRGLRGTI DAALGRAGDR TKRTVKREDT DDAREAITHY QVMERYGEKP
DATCLASLVE CRLETGRTHQ IRVHMAHIGH PLIGDPEYGA AFKTKANLLP DAAKAIVTNF
HRQALHAYLL AFEHPTTGDV MHFAAPIPDD METIIRALRD IA
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