Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3489 |
Symbol | |
ID | 7388762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 2887178 |
End bp | 2887873 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643652330 |
Product | ABC transporter |
Protein accession | YP_002550513 |
Protein GI | 222149556 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | [TIGR03410] urea ABC transporter, ATP-binding protein UrtE |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGACAG TTGAAAATCT CAATCTTCAC TATGGTGCCG CCCAGGCGCT GCGCGGCGTG AATATCACCG CGCCCATGGG CAAGATTACC TGCGTGCTGG GTCGCAACGG GGTGGGTAAA AGCTCGCTTT TGCGCGCCGT GACCGGCCAG CATCCGGTGT CTGGAGGCAC GATTGCCTTT GAAGGCACGG TGTTGAACGG CATGGCACCG TTCAATCGGG CGCGGCACGG TGTCGGTTAT GTGCCGCAGG GGCGCGAGAT CTTTCCGCTG CTGTCGGTCA AGGAAAATCT GGAAACCGGC TTTGCGCCGC TGAAGCGCAA GGACCGGACG ATCCCGGACG ATATTTTCGC GCTGTTTCCT ATTTTGCAGA CCATGTTGTC GCGGCGCGGC GGCGACCTGT CGGGTGGCCA GCAGCAGCAG TTGGCGATTG GCCGAGCCAT GGTAACCCGC CCGAAAATCC TGGTGCTGGA CGAGCCGACC GAGGGCATCC AGCCATCGAT CATCAAGGAT ATCGGTCGGG CGATCCGCTA CTTGCGGGAT TCAACCGGCA TGGCGATCCT GTTGGTCGAG CAATATCTCG ACTTCTGCCG GGAGCTTGCC GACCATGTCT ACATCATGGA TCGCGGCGAA ATCGTCCATG AAGGCGGTGC AGAAACGCTG GATACGGTCG AGGCTCGCCG CCACCTTACG GTATAA
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Protein sequence | MLTVENLNLH YGAAQALRGV NITAPMGKIT CVLGRNGVGK SSLLRAVTGQ HPVSGGTIAF EGTVLNGMAP FNRARHGVGY VPQGREIFPL LSVKENLETG FAPLKRKDRT IPDDIFALFP ILQTMLSRRG GDLSGGQQQQ LAIGRAMVTR PKILVLDEPT EGIQPSIIKD IGRAIRYLRD STGMAILLVE QYLDFCRELA DHVYIMDRGE IVHEGGAETL DTVEARRHLT V
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