| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3455 |
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| Symbol | amaB |
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| ID | 7387057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2858743 |
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| End bp | 2859972 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643652303 |
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| Product | allantoate amidohydrolase |
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| Protein accession | YP_002550486 |
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| Protein GI | 222149529 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.423786 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGCGCGTAA ATGCTGACCG GCTGTGGGAC AGCCTGATGG ACATGGCCAA GATTGGCCCC
GGCATTGCTG GCGGCAACAA CCGCCAGACC TTGACCGACG AAGACGCCGA AGGTCGCGCG
CTGTTCCAGA GCTGGTGCGA GGCAGCAGGC ATGACCATGG GCGTGGACCA GATGGGCACC
ATGTTCGCCA CCCGCCCCGG CACCGACCCC GATGCCCTGC CCGTTTATGT TGGCTCCCAC
CTCGACACCC AACCCACCGG CGGCAAGTAT GATGGCGTGC TGGGTGTGCT GGCCGCGCTG
GAAGTGGTGC GCTCCATGAA CGATCTTGGC GTTAAAACCA AGCATCCGAT TGTTGTGACC
AACTGGGCCA ATGAAGAAGG CGCGCGCTTT GCCCCGGCCA TGCTGGCCTC CGGCGTGTTT
GCGGGCATGC ATACGCTGGA TTACGCCTAT TCCCGCAAAG ACCCAGACGG CAAGACCTAT
GGCGATGAGC TGAAGCGCAT TGGCTGGCTG GGCGAGGAAG AGGTTGGTGC GCGCAAAATG
CACGCCTATT TCGAATATCA CATTGAGCAA GGGCCGATTC TGGAAGCCGA AAACAAGCAG
ATTGGCGTTG TTACCCACTG TCAGGGCCTG TGGTGGCTGG AATTTACGCT GACAGGCCGT
GAAGCGCACA CTGGCTCCAC GCCAATGAAC TTGCGCGTCA ACGCTGGTCT GGCCATGAGT
CGGATCATTG AGATGGTGCA GGATGTGGCG ATGAGCGAGC AGCCGGGTGC TGTTGGCGGC
GTGGGACAAG TGTTCTTCTC GCCCAACTCC CGCAATGTGC TGCCGGGCAA GGTGGTGTTC
ACGGTGGATA TTCGCACCCC AAGCCAAGAC AAACTCGACC GGATGCGGGC GAAGATTGAA
GCAGAAGCCG CAACAATCTG CGAAGCGCTG GGCGTTGGCT GCTCAGTGGA AGCTGTTGGC
CATTTCGATC CCGTGACGTT TGATCCCACG CTGGTAGGCC GCGTGCGCGA TGCCGCCGAG
CGGCTGGGCT ATAGCCACAT GAACATCATT TCCGGTGCTG GCCACGATGC TTGCTGGGCG
GCGCGGGTTG CGCCATCGAC GATGATTATG TGTCCGTGTG TGGGTGGGCT TTCGCACAAT
GAGGCGGAAG AGATTTCCAA GGATTGGGCT GGTGCCGGGT GTGATGTGTT GTTGCATGCG
GTGTTGGAGA CGGCGGAGGT TGTGGGGTAA
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| Protein sequence | MRVNADRLWD SLMDMAKIGP GIAGGNNRQT LTDEDAEGRA LFQSWCEAAG MTMGVDQMGT
MFATRPGTDP DALPVYVGSH LDTQPTGGKY DGVLGVLAAL EVVRSMNDLG VKTKHPIVVT
NWANEEGARF APAMLASGVF AGMHTLDYAY SRKDPDGKTY GDELKRIGWL GEEEVGARKM
HAYFEYHIEQ GPILEAENKQ IGVVTHCQGL WWLEFTLTGR EAHTGSTPMN LRVNAGLAMS
RIIEMVQDVA MSEQPGAVGG VGQVFFSPNS RNVLPGKVVF TVDIRTPSQD KLDRMRAKIE
AEAATICEAL GVGCSVEAVG HFDPVTFDPT LVGRVRDAAE RLGYSHMNII SGAGHDACWA
ARVAPSTMIM CPCVGGLSHN EAEEISKDWA GAGCDVLLHA VLETAEVVG
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