Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3433 |
Symbol | |
ID | 7387041 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2840228 |
End bp | 2841121 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643652287 |
Product | transcriptional regulator LysR family |
Protein accession | YP_002550470 |
Protein GI | 222149513 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.955105 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGGAGAA ACGCACAAGT GAACTGGGAT GATTATCGGT GCTTCCTGAC CCTCGCCAAA ACGGGTAGCT TCTCACGGGC AGCACGCCTG CTTCACGTCG ATCACACTAC TGTCGGCCGG AGGGTTGCGG CATTAGAGGT GGATCTCGGT ATAAAGCTGG TGGAGCGGCT GGCGAGAGAA GTCCGGCTGA CGGCAGAGGG TCATGATCTG GCGACCCTGG GACTACCCGT CGAAGAAGCA ATGGCCAGCG TCGAACGGGC GGCGGCAGGC GGCGGTGCAG CATTGGCGGG ACCTGTGCAT ATTTCCGCGC CACCCGGGCT GGCATCGCTC TTGCTGGCAC CGAAACTGGT TTCCCTGCAT CGCCAGTATC CCGAAATCAA AATCACGATG TCGAGTGACA AGGATTTTGC AAATCTCAAT CGGCGCGAAG CGGATATTGC ACTACGATTG TCGCGCCCAC TCTCGAACGG ACTTGTCGCC CGCAAACTCC GCGATATCCC ATTCTTCTTT TTCGCAAGCC ACACCTATGA CATCGCGGAG GATGACTGGG AATTTATCAC CTATCTTCAG GCGGATGATA TTTTGCCGCA ACAGAGCTGG TTGATGCAGC ATATCGGGTC GAGAACCATT GCGCTGCGAT GCAGTGATGC CGCGAGCCAG GTTCAGGCCG CCGCCTCCGG CCTCGGCGTG GCACTGTTGC CGGACTATCT TGGATATAAT GATACCCGTC TCAGGAAATG CCCCAGCCGG CTCACGCCGC CACGGCGCGA ATTATGGATG GTGGTACATG ACGATATTCG CCACGCACCA CGGGTGCGGG TCGTGCTGGA TTTCCTGATC GGCATACTCA CCGCCACGCA AGATCTCGAA TTGCCACATG CATCAGAGGC TTGA
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Protein sequence | MWRNAQVNWD DYRCFLTLAK TGSFSRAARL LHVDHTTVGR RVAALEVDLG IKLVERLARE VRLTAEGHDL ATLGLPVEEA MASVERAAAG GGAALAGPVH ISAPPGLASL LLAPKLVSLH RQYPEIKITM SSDKDFANLN RREADIALRL SRPLSNGLVA RKLRDIPFFF FASHTYDIAE DDWEFITYLQ ADDILPQQSW LMQHIGSRTI ALRCSDAASQ VQAAASGLGV ALLPDYLGYN DTRLRKCPSR LTPPRRELWM VVHDDIRHAP RVRVVLDFLI GILTATQDLE LPHASEA
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