| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3429 |
|---|
| Symbol | |
|---|
| ID | 7387172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2837898 |
|---|
| End bp | 2838371 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643652284 |
|---|
| Product | transcriptional regulator MarR family |
|---|
| Protein accession | YP_002550467 |
|---|
| Protein GI | 222149510 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.905636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATC AACATTTTAT TGGTGAGGGC GCCGGTGTTC GACAAGGGGT TGTCGATTAT
TCCGGGCTAG CCTATTCACT CGGCTTTCGC GTTAGGCGCG CACAACTGGC CATTTTGCAG
GACTTTCAGG ATGTTCTCGG CGGTCATGAT ATCCGGCCAG CTGATTTTTC CGTTCTGTCG
ATCATTGCCG GTAATTCCGG AATGAAACAA AGCGACGTCG CCTCGACGCT GGCGATCCAG
CGGGCCAATT TCGTCGCGAT CGTCGACGGG CTGGAAGACA AGGGCCTTAT CGAGCGCCGT
CGCTCGGATA CGGACCGCCG CGTCTATTTT CTTCACCTGA CGTCCAAGGG TTCGGCATTT
CTCGAAGAGC TTTTGCCCAA GTGGCGCGAG CATGAGGAAA AATTCATTGG TCGGCTCGGC
GGATCGGAAA AACGCGATCA GCTCATTGAA TTGCTGAAGT CGATTTCTGA GTAA
|
|---|
| Protein sequence | MSNQHFIGEG AGVRQGVVDY SGLAYSLGFR VRRAQLAILQ DFQDVLGGHD IRPADFSVLS
IIAGNSGMKQ SDVASTLAIQ RANFVAIVDG LEDKGLIERR RSDTDRRVYF LHLTSKGSAF
LEELLPKWRE HEEKFIGRLG GSEKRDQLIE LLKSISE
|
|---|
| |