Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3364 |
Symbol | |
ID | 7387510 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 2786442 |
End bp | 2788658 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643652238 |
Product | hypothetical protein |
Protein accession | YP_002550422 |
Protein GI | 222149465 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.451115 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCTTCGA AAAAAGTTTC GGCGCCTGCC GAAGAAATCG TCAATCCCGG AAGCGTCAGC CAGACTGTTT ATGATACGAT CATCATCGGC TCCGGCTTCG GCGGCAGCGT CGCCGCGCTC AGGCTGTGCG AGGCCTTCCA GAACGTCAAT TATTCGGCTA CTGCAGGCAA GCCCGTGCTG CTGCTGGAGC GCGGCAAGGA CTGGTGGGGC AATCTGACAG GCCAGCCCAC CAAAGCGCCG CCGTTTAGCA ACTATCGCCA GCCGGATGGA CGCGCTGGCT GGATGATGGA TCTCGAGCCG TTCGGCACGC CGCAATCTCC ACCGGATACC TATGGCCAGC CCGAGGAGTT GGATGGCGAG ACGGCCAACT TCAATACGAT GACCACCTAT GCGCAGCGTC CGATCCCGGT CTATCCCGGC CTGGTGGAAA TGATCGTTGC CTATCCGCCA CCGCCGCCGG AGCCGGTGCC GGATGCTCCC GCCCCGACAC CAACCATGAC CACCATCGTT GGCGCGGCGC TCGGCGGCAC CTCGCATGTC TACAATACCT TCTTCCAGAA GCCGTCTCAG CTGGCCTTCA CCCTGGCCTT CCGCGATCCC GAGAAGTTGG ACTCCTACGA GAGTGTACTG CTGTCCTATG GCGAACTGGC GCAGCATTAC GACACCGTCG AGAAAATGAT GGAGCCTAAA ACCATCGATG ACAAGGACAA CATGGTGACG GAGACGGTGC CCGTCAGAGA GAAACCGGTC TTTACCTATG CGCTCAAGAG AAGCCCGCCC TATCTTTCCA CTCGCAGCTT CAGGAAGCAG GTCAAGAAAA TCGAAGATGC TGTCCGGTTG AGTAAAGTCG AAACGCCGAT TAAGTCGGTT CAACTGGAAT ATACCAAGCT GGCGCTCGAC TGGAGCGTGG TGTGCAAGGA AGTGGAAGTC GAAATGCTGC CCTCCGCCAT CATCGGCGAA ATGTGGTATG GGATGAACAG CTATTCGATC TCGAAGACGC CGTCGGAAGG CCAGGAATTG CTCGGCGTCA AGAAGGCGCT GGACCAGAAT TACCTCAAGC AGGCCAAGGA CACCGGCCTG CTTGACATTC GTTGCCTGAG CAATGTCACC AATGTCTATC AGGACCCGAA TTCCGATAAA GACAGCCCAA TTTATGTCAT CAATGTCGAG CAGATCGCAC CGACCGATGT CGCCAATCCG ACACTGCTGG TCTACCGGGC GAAGAACGTG ATCTTCTCCG CCGGCTCCAT GCATACGGCA TCGATGCTGC TGGAATATTC CAACAATCCC AATCCAGAGG CACCTGACAC CAAAGGCCTG CCAGCTCTGA GCAAATATGT TGGCAAGTTC TGGGGCCAGA ATGGCGATGT CACCGGCACT CAGGACCTGA GCATCAAGAC GCGGCCTTCG GATGGCGGTC CCGGTTCGAC CGATGCCTCC TTCTATTTCG TCAATGACGA CACCTTGAAT GGCATCACCC TTCCGGATGA CGAGTTGGAG GCGGCCTTCA ATCAGTCGAT CGACTACATG AAGGTCAATA AATCGGCGTC TTTCATTCGC CTCATGCTCT ATCCGGCCTG GTATGACGAA GCCGACAATC TGCAGAACAC CTATAATATG TCGGTCTGCT ACCAGCCGGC GCCGGGCGAA TTCCTCGTGG ATCCGGCTTC GGACAAGTCT TCGGGCCGCA AAGTCTACAG CCTGTATTAT CCCAATACGC CGACAGAGAA GGACGAGGGG GCGGAGCCTA CCGAGGTTGG CGATATCAAT GTCGGCGTGC TGGATTCGGT CAATGCGCTC ACCACGGTGC TGACCACATG GGGAGAAGTC AATGCCAGCA AGGAGGGCGA GAGCCTGACC CGGCGCAATG GACCGCTCAC CTATCGTGGC CCGCTGCCAG CGCTGCAATC GACCCGGTTG CATCACGCCC GAAGCCTGGA AGGCTGGGAC CCCAAACGCG TGCCGGAGGA ATTCGTGGTG GCCTATGGCG TCACGGCCCA TCCGCTCGGG GGCTGCGTGC TGGGCAAGGC CTGCAACAAA CACGGCCAGG TCTTGGCAGC CGACAACGAG ACGGCGGTGC CGGGCCTCTA TGTGGTTGAT GGTTCTTTGA TCCCCGGTTC CACCGGTGCC GCGACCCCGG CATGGACCAT TGCCGCCGTG GCCGAATATT GCATGACGAA AATCACCGGG AATATCGTCG GCACCACGCA GCAGTGA
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Protein sequence | MSSKKVSAPA EEIVNPGSVS QTVYDTIIIG SGFGGSVAAL RLCEAFQNVN YSATAGKPVL LLERGKDWWG NLTGQPTKAP PFSNYRQPDG RAGWMMDLEP FGTPQSPPDT YGQPEELDGE TANFNTMTTY AQRPIPVYPG LVEMIVAYPP PPPEPVPDAP APTPTMTTIV GAALGGTSHV YNTFFQKPSQ LAFTLAFRDP EKLDSYESVL LSYGELAQHY DTVEKMMEPK TIDDKDNMVT ETVPVREKPV FTYALKRSPP YLSTRSFRKQ VKKIEDAVRL SKVETPIKSV QLEYTKLALD WSVVCKEVEV EMLPSAIIGE MWYGMNSYSI SKTPSEGQEL LGVKKALDQN YLKQAKDTGL LDIRCLSNVT NVYQDPNSDK DSPIYVINVE QIAPTDVANP TLLVYRAKNV IFSAGSMHTA SMLLEYSNNP NPEAPDTKGL PALSKYVGKF WGQNGDVTGT QDLSIKTRPS DGGPGSTDAS FYFVNDDTLN GITLPDDELE AAFNQSIDYM KVNKSASFIR LMLYPAWYDE ADNLQNTYNM SVCYQPAPGE FLVDPASDKS SGRKVYSLYY PNTPTEKDEG AEPTEVGDIN VGVLDSVNAL TTVLTTWGEV NASKEGESLT RRNGPLTYRG PLPALQSTRL HHARSLEGWD PKRVPEEFVV AYGVTAHPLG GCVLGKACNK HGQVLAADNE TAVPGLYVVD GSLIPGSTGA ATPAWTIAAV AEYCMTKITG NIVGTTQQ
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