Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3321 |
Symbol | xdhB |
ID | 7387476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2744833 |
End bp | 2747178 |
Gene Length | 2346 bp |
Protein Length | 781 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643652204 |
Product | xanthine dehydrogenase molybdopterin binding subunit |
Protein accession | YP_002550388 |
Protein GI | 222149431 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG4631] Xanthine dehydrogenase, molybdopterin-binding subunit B |
TIGRFAM ID | [TIGR02965] xanthine dehydrogenase, molybdopterin binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.98232 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAAGG CCCTTTTCAC CACCACTGCC ACCATCCAGG GTCCGATGCA TCAATCGCTG CGCCATGATT CAGCCCATAA GCATGTGGCT GGAAGTGCCG AATATATCGA CGATATTCCA GAACCCGCAG GCCTGTTGCA CGGCGCGCTC GGCATGGCGG ATCGCGCCCA TGCCGACATT CTCTCCATCG ATCTGTCCGG TGTTCAGACC TATCCCGGCG TCGTCGCGGT GCTGACGGCC AGCGACATTC CCGGCACCAA CGATGTCTCC TCCGGTGGAC GCCATGACGA GCCGTTGATC GCCACCGACA GGGTGGAGTT TCACGGCCAG ACCGTTTTTG CGGTAATTGC CGAGACCCGC GACGCGGCCC GCAAGGCAGC ACGGCTCGCC AAAATAGAAT ACCGCGACCT GCCCTTCTGG ACCGATATCG ATTCAGCACT AGAAAATGGC GCGCCGCTCG TCACCCCAGG CATGGTGCTG AAGCGCGGCA CGCCGGAAAG CGAGCTGGAC AAGGCCGAGC ACCGGCTGCA AGGCGCGATG CGGATCGGCG GACAGGAGCA TTTCTATCTG GAAAGCCATA TCGCGCTGGC CATTCCCGGC GAAGACGATG ATGTCACCGT CTGGTCATCG ACCCAGCATC CGTCGGAAAT CCAGCATATC GTTGGCCATG TGCTGGATAT TTCATCGCAT GCGATCACGG TCAATGTGCG GCGCATGGGC GGCGGCTTCG GTGGCAAGGA AACCCAGGGC AATCAGTTTG CGGCACTGGC GGCCTTGGCC GCCAAGAAGC TCAACCGGGC TGTGAAGTTT CGTCCGGACC GCGACGAAGA CATGAGCGTT ACCGGCAAAC GCCATGATTT TAAAATGGAT TTCGACGTTG CCTTCGATGG TGATGGCCGT ATCCACGCCA TAGAAGCAAA CTTCGCCGCC CGCTGCGGCT ATTCCTCGGA TCTTTCCGGC CCCGTCACCG ACCGGGCGCT GTTTCACGCC GATAGCAGCT ATTTCTACCC GCATGTGAAG CTGACCTCTC AACCGCTGAA AACCCACACG GTCTCCAACA CCGCCTATCG CGGCTTCGGT GGCCCCCAGG GCATGCTGGG GGCCGAACGG GTGATCGAGG AAATCGCCTA CGCCTTGCGC AAAGACCCGC TTGAGGTTCG CAAGGCCAAT TTCTACGGCG AGACCGGCTC TGGCCGCGAC CTGACGCCCT ATCACCAGCA GGTCACCGAC AATATCATCG CCCGCGTGGT CGAGGAGCTG GAAACCTCCT GCGATTATCA GGCACGGCGC GCCGCGATCC TCGACTTCAA CAAGACCAGT TCGGTGATCA AAAAAGGCAT TGCGCTGACC CCGGTCAAGT TCGGTATCTC CTTCACCATG ACCGCCTTCA ACCAGGCCGG CGCGCTGGTG CATGTCTATC AGGACGGCTC CATCCATCTT AACCATGGCG GCACCGAAAT GGGCCAGGGT CTCTATACCA AGGTGGCCCA GGTGATTGCC GATGGCTTCC AGGTTGATAT CGACAAGGTG AAGATCACCG CCACCACGAC GGGCAAGGTG CCGAATACCT CGGCCACCGC TGCCTCTTCC GGCTCGGACC TGAACGGCAT GGCCGCCTAT GATGCCGTGC GCCAGATCAA GGAGCGGCTG GTGGCGTTTG CCGCGGAAAA ATGGGGCGTG TCGCAGGCCG AAGTGGTGTT CCTGCCCAAT CGGGTCAGGG TTGGCGGTGA AGAGATTGCG TTCCCCGATT TCATCCGTCA GGCCTATTTT GCCCGCGTCC AGCTTTCCGC AGCTGGTTTC TACAAGACAC CGAAAATCCA CTGGAACCGC GAGACCGGGC GCGGCACGCC GTTCTATTAC TATGCCTATG GCGCGTCCTG CACCGAGGTC TCAATCGATA CGCTGACCGG CGAATATCTT GTTGACCGTA CCGATATTCT CCACGATGTC GGCAAATCGC TCAATCCGGC TATCGATATC GGCCAGATCG AAGGCGGTTT CGTGCAGGGC ATGGGCTGGC TGACCACGGA GGAATTGTGG TGGGACGGCA AGGGGCGGCT GCGCACCCAC GCGCCCTCCA CCTACAAGAT CCCGCTCGCC TCCGACCGGC CGAAGATTTT CAACGTCAAG CTGGCGGACT GGGCGGAAAA TACCGAACTC ACCATTGGCC GTTCCAAGGC AGTCGGCGAA CCGCCCTTCA TGCTGGCCAA TTCGGTGCTG GAGGCAATCT CCATGGCAGC GGCCAGCGTG GCCGATTACC GGTTCTGCGC GCGCCTCGAT ACACCCGCCA CGCCGGAGCG GGTATTGATG GCGGTGGAAC GTTTGAAGGA GGCACAGCGC GCGTGA
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Protein sequence | MDKALFTTTA TIQGPMHQSL RHDSAHKHVA GSAEYIDDIP EPAGLLHGAL GMADRAHADI LSIDLSGVQT YPGVVAVLTA SDIPGTNDVS SGGRHDEPLI ATDRVEFHGQ TVFAVIAETR DAARKAARLA KIEYRDLPFW TDIDSALENG APLVTPGMVL KRGTPESELD KAEHRLQGAM RIGGQEHFYL ESHIALAIPG EDDDVTVWSS TQHPSEIQHI VGHVLDISSH AITVNVRRMG GGFGGKETQG NQFAALAALA AKKLNRAVKF RPDRDEDMSV TGKRHDFKMD FDVAFDGDGR IHAIEANFAA RCGYSSDLSG PVTDRALFHA DSSYFYPHVK LTSQPLKTHT VSNTAYRGFG GPQGMLGAER VIEEIAYALR KDPLEVRKAN FYGETGSGRD LTPYHQQVTD NIIARVVEEL ETSCDYQARR AAILDFNKTS SVIKKGIALT PVKFGISFTM TAFNQAGALV HVYQDGSIHL NHGGTEMGQG LYTKVAQVIA DGFQVDIDKV KITATTTGKV PNTSATAASS GSDLNGMAAY DAVRQIKERL VAFAAEKWGV SQAEVVFLPN RVRVGGEEIA FPDFIRQAYF ARVQLSAAGF YKTPKIHWNR ETGRGTPFYY YAYGASCTEV SIDTLTGEYL VDRTDILHDV GKSLNPAIDI GQIEGGFVQG MGWLTTEELW WDGKGRLRTH APSTYKIPLA SDRPKIFNVK LADWAENTEL TIGRSKAVGE PPFMLANSVL EAISMAAASV ADYRFCARLD TPATPERVLM AVERLKEAQR A
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