Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_3282 |
Symbol | |
ID | 7387448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 2714173 |
End bp | 2715018 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643652178 |
Product | ABC transporter membrane spanning protein (proline/glycine betaine) |
Protein accession | YP_002550362 |
Protein GI | 222149405 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
TIGRFAM ID | [TIGR03416] choline ABC transporter, permease protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGATTGGC TGACTGATTT CAAAATTCCC ATCGGCCCCA CCGCCAAAGT CGTTGTTGAC TGGCTGACGG CCAACGGAGC CTGGTTTTTC GACTGGCTCT CCCACCTCAT TTCAAGCAGT ATCGATGGCG TTCTGTTCGT GCTGCAATAT CCCAACCCGC TGGTGACAGC ACTTGCCATC AGCATTATCG CCTGGCTGCT GCGCCGCTCC CTTCTCGTGG CGATCTTCAC CTTTCTCGGC CTGGCGCTGA TCATCAACCA GGGCTATTTC AAGGAAACCA CCGAGACGCT GGCGCTGGTT CTGGCCTCCA CCGCCGTCTG TATGCTGATC GGCGTGCCGC TCGGCATCCT GGCCGCGCGC CGCGCATGGA TCTACGCCCT CATGCGCCCG GTCCTGGACC TGATGCAGAC CATCCCGACC TTCGTCTATC TCATCCCGGC GCTGATCCTG TTCGGGCTCG GCATGGTGCC CGGTCTGATC GCCACGGTGA TCTTTGCCGT CCCCTCACCC ATTCGTCTGA CCCGGCTCGG CATCGTCTCC ACCCCTTCCT CCCTGGTGGA AGCTGCCGTT GCCTTCGGCG CCACGCCCAC CCAGGTGCTG CGCAAGGTGG AATTGCCCTA TGCCCTGCCA CAGATCATGG CAGGACTGAC CCAGACCATC ATGCTGTCGC TGTCCATGGT GGTGATTGCC GCGCTGGTCG GCGCTGCCGG TCTCGGCGTT CCGGTGGTGC GGGCGCTGAA TACCGTCAAT ATCGCCAGGG GTTTCGAAGC CGGCCTTTGT ATCGTCATCC TGGCAATCAT TCTGGATCGG ATGTTCCGCA TTCCATCGGC GGGAGATGAC CAATGA
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Protein sequence | MDWLTDFKIP IGPTAKVVVD WLTANGAWFF DWLSHLISSS IDGVLFVLQY PNPLVTALAI SIIAWLLRRS LLVAIFTFLG LALIINQGYF KETTETLALV LASTAVCMLI GVPLGILAAR RAWIYALMRP VLDLMQTIPT FVYLIPALIL FGLGMVPGLI ATVIFAVPSP IRLTRLGIVS TPSSLVEAAV AFGATPTQVL RKVELPYALP QIMAGLTQTI MLSLSMVVIA ALVGAAGLGV PVVRALNTVN IARGFEAGLC IVILAIILDR MFRIPSAGDD Q
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