Gene Avi_3185 details

Gene Information

• Locus tag: Avi_3185
• Symbol: rplY
• ID: 7388124
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2638648
• End bp: 2639250
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 643652108
• Product: 50S ribosomal protein L25/general stress protein Ctc
• Protein accession: YP_002550292
• Protein GI: 222149335
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1825] Ribosomal protein L25 (general stress protein Ctc)
• TIGRFAM ID: [TIGR00731] ribosomal protein L25, Ctc-form

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.161368
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCACG CATCTTACGA GCTCAAGGCC GAAACGCGCG AACGGGTTGG TAAGGGGTCC 
TCCCGTGAAC TTCGCCGCAA CGGTCTCATT CCCGCTGTCA TCTATGGTGA CAAGCAGGCT 
CCTATTGCCA TCACCCTGAA CACCAATGAA GTCACCAAGC GTATTCATGC TGGCGGTTTC 
ATGACCACGG TGGCGACCAT TGAAGTCAAC GGCGAAAAGA TCCGCGTCCT GCCCAAGGAC 
TACCAGCTGG ATCCAGTCCG CGACTTCACC ATGCATATCG ACTTCCTGCG CGTTTCGGCA 
AACAGCCAGG TCACGGTTGC CGTGCCTGTC CGTTTCGTCA ATGAAGACAA GTCCGCCGTC 
AAGACCGGCG CTGTCCTCAA CATCGTGCGC CACGACGTCG AGTTGCAGGT TCCGGCCAAC 
AACATTCCAG AAGCCATCAC CTTCGATCTG GAAGGTCTGA AGATCGGCGA CAGCGTGCAT 
ATCTCTGCCG TGAAGCTGCC TTCTGGTGTG ACCCCTGTGA TCACCGACCG CGACTTCACG 
ATTGCAACTC TCGTCGCTCC AGACGTTGAC GTTGCCGACG AAGAAGAAGC AACCGAAGAA 
TAA 

 

Protein sequence

MSHASYELKA ETRERVGKGS SRELRRNGLI PAVIYGDKQA PIAITLNTNE VTKRIHAGGF 
MTTVATIEVN GEKIRVLPKD YQLDPVRDFT MHIDFLRVSA NSQVTVAVPV RFVNEDKSAV 
KTGAVLNIVR HDVELQVPAN NIPEAITFDL EGLKIGDSVH ISAVKLPSGV TPVITDRDFT 
IATLVAPDVD VADEEEATEE