| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3128 |
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| Symbol | lpcC |
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| ID | 7388666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2599653 |
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| End bp | 2600756 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643652070 |
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| Product | lipopolysaccharide core biosynthesis mannosyltransferase |
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| Protein accession | YP_002550254 |
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| Protein GI | 222149297 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0438] Glycosyltransferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.360612 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGCGA AAGGTACCCT GTGCGTGCTT GATCCTGCTT CAATCCTTGT GGTGGCTCCT
CATTTCAAGC GGCGACTCTC GGGCGTAACC TCCACCGTGG TGCAATTGAT CCCGCAGCAG
CGCCGCCGTG GGCTGGCCAT TGCCACACTT GGTCCCGGCC TGCCGGAGAC CATGCCCGCC
CTCACCTTCG CACAAATGCC AGCCTTGTGG AAAAAGCCGC GCGGCGCTTC CCATCGCGTC
TGGCATGCCC GGCGCAATCT GGAAATGTTG GTAGGCGTGG TGTTGCGCGA TGTGTTGCGC
ATGCCGCTGA AACTGCTGTT TACCTCGGCG GCCCAGCGTC ATCACAGCCG CTATACCCGT
TGGCTGATCT CGAAAATGGA TGCCGTGGTC GCCACCAGCG CCCGCTCCGG CTCATTTTTG
CATGTACCGC ATAGCGTTAT CCGCCATGGC ATCGACACCG AACTGTTTCA TCCGCCGCAA
GGTGCCGAGG ACAGGATCGC AGCCACCAAC CTGCCGGGCG ATTATCTGAT CGGCTGCTTT
GGTCGGGTGC GCCATCAAAA GGGCACCGAT CTATTCGTCA AAGCAATGAT CGAACTTCTA
CCCCGCTATC CCGGCTGGAC AGCCGTGGTC TCCGGCCGCG TCACCCCGGA ACATAAAGGT
TTTGCCGAGG GGCTGAAGGC GCAGATTGCC GCGGCCAGTC TGACGGAGCG GATCGTTTTT
CTGGGCGAGG TCGAGGATAT CAAGCCGTGG TATCGGCGGC TGACGCTCTA TGTCGCGCCC
TCGCGCAATG AAGGGTTTGG CCTGACGCCA CTGGAAGCCA TGGCGTCCGA AACCGTGGTG
GTCGCATCGG ATGCCGGGGC CTATGCGGAA CTGATTGCCG AAGGGGCAAC CGGCGCCGTG
GTTGCCGCCG ATGCCTATGC GCCGCTGCGT GATGCAATCG AGCCTTATCT GGCCGATCCC
GGTCGCGCCT GCCTGCATGG CAAGGCGGCC GTTGCCCATG TGCGGGAAAA TTTCGCGCTT
GCCAGAGAAG CGGCAGGGCT GGAGGCGGTC TATAGCCGAT TGCTCGGCAG GCCGGTCATC
GCGCCGCCCG CGCCCCAACC ATAA
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| Protein sequence | MMAKGTLCVL DPASILVVAP HFKRRLSGVT STVVQLIPQQ RRRGLAIATL GPGLPETMPA
LTFAQMPALW KKPRGASHRV WHARRNLEML VGVVLRDVLR MPLKLLFTSA AQRHHSRYTR
WLISKMDAVV ATSARSGSFL HVPHSVIRHG IDTELFHPPQ GAEDRIAATN LPGDYLIGCF
GRVRHQKGTD LFVKAMIELL PRYPGWTAVV SGRVTPEHKG FAEGLKAQIA AASLTERIVF
LGEVEDIKPW YRRLTLYVAP SRNEGFGLTP LEAMASETVV VASDAGAYAE LIAEGATGAV
VAADAYAPLR DAIEPYLADP GRACLHGKAA VAHVRENFAL AREAAGLEAV YSRLLGRPVI
APPAPQP
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