| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3112 |
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| Symbol | |
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| ID | 7388657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2586760 |
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| End bp | 2588157 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643652061 |
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| Product | multidrug efflux protein |
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| Protein accession | YP_002550245 |
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| Protein GI | 222149288 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTATG CCTCGTCCCA GCGCCTTGGC GCGCCCATTG AAAGTTGGCT TAGCCATGTT
CGCGCCACGC TGGCGCTGGG CATTCCCCTG GCGGGGGCGC AACTGGCGCA GCTGGCAATC
CACACGACCG ATGTGGTGAT TGTCGGCCGT CTGGGAGCCG AATCGCTGGC GGCTTTGGTG
CTGGCCGGGC AATTTTTCTT CACGGTGTTC ATTTTCGGTT CCGGCTTTTC CATCGCCGTC
ATGCCGATGG TGGCCAATGC CTATGGCAAG GGCGATGTGC GTCTGGCACG CCGCTCCATT
CGCATGGGTC TGTGGGTGTC GCTGGCCTAT AGCGTGGTGA CGTGGCCGCT CTTCCATTAC
TCGCGTGATG TGTTGCTGGC CCTGGGGCAG GTGCCGCAGG TGGTCGAGCT CGCCTCGAGC
TATATCCGCA TCATGTGGCT GAGCCTGCCA GTGGCGCTGA TGTTTGCGGT GATGCGGGCG
CTGGTCAGCG CCATCGGGCG GGCGCAGATC GTCCTCTATA TCACCATCGC CACGTTGGTG
CTGAATGCCG CCCTTGCTTA CTGCATTGTG CTGGGCCATT TCGGCTTTCC GGCTTTCGGC
ATTCTGGGGG CTGCCTGGGT GGCGGTTTCG GTCAATGTCT TCGCCATGAT CACCATGGGT
CTCTATCTGC ATTTCAACAG TGTTACCCGG AAATACGAAT TGTTCGTGCG CTTCTGGCGG
CCCGATTGGG ATGCGTTGCG CGATGTGATC AAGCTTGGCC TGCCGATTGG CGTGACGGTG
TTGGCCGAAG TCAGCCTGTT TACGGCTGCC TCCCTGTTGA TGGGCAGCAT TGGCACGATT
GAACTGGCCG CACATGGCAT TGCCCTGCAA TTGGCCTCCA TCGCTTTCAT GATCCCACTG
GGGCTGGCGC AGGCCGCCAC CGTGCGGATC GGCGTTGCCC ATGGGCGCGG CGATTTTACC
GATGTGGTGC GGGCGTCCAT CACGGTTGTC AGCATGGCAG CCCTGATCTC GGTGATCGGC
GGGTTGCTGT TCTTCTTTTT CTCCAATGAA TTGAGCGGAA TGTTCCTCGA CCGTGGCCGC
GGTGATGCGG CGGCGGTGCT GGATTATGCA GCGCCGCTGG TGGTGGTCGC CGGTATTTTC
CAGCTGGTCG ATGGTATGCA GGCGGTTGCC ACTGGGCTGC TGCGCGGCCT GAAGGATGCC
AGCGTGCCGA TGGTCCTGGC GCTGATTTCC TATTGGCCTA TTGGCTTCGG GCTGGCCTGG
TTCATGGCGT TTCCCTTGGG GATGGGCGGT CTTGGCGTCT GGTTCGGTTT CCTGATCGGG
CTTTCCAGCG CTGCCGTGAT GATGGGGCTG CGGTTCTGGC TGCGCCTGCG CCACGAGATG
CGGATGATGA GCCGGTAA
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| Protein sequence | MTYASSQRLG APIESWLSHV RATLALGIPL AGAQLAQLAI HTTDVVIVGR LGAESLAALV
LAGQFFFTVF IFGSGFSIAV MPMVANAYGK GDVRLARRSI RMGLWVSLAY SVVTWPLFHY
SRDVLLALGQ VPQVVELASS YIRIMWLSLP VALMFAVMRA LVSAIGRAQI VLYITIATLV
LNAALAYCIV LGHFGFPAFG ILGAAWVAVS VNVFAMITMG LYLHFNSVTR KYELFVRFWR
PDWDALRDVI KLGLPIGVTV LAEVSLFTAA SLLMGSIGTI ELAAHGIALQ LASIAFMIPL
GLAQAATVRI GVAHGRGDFT DVVRASITVV SMAALISVIG GLLFFFFSNE LSGMFLDRGR
GDAAAVLDYA APLVVVAGIF QLVDGMQAVA TGLLRGLKDA SVPMVLALIS YWPIGFGLAW
FMAFPLGMGG LGVWFGFLIG LSSAAVMMGL RFWLRLRHEM RMMSR
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