Gene Avi_3107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3107 
SymbolmnhA 
ID7388653 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp2582996 
End bp2583574 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content57% 
IMG OID643652057 
ProductNa+/H+ antiporter 
Protein accessionYP_002550241 
Protein GI222149284 
COG category[R] General function prediction only 
COG ID[COG1268] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.468263 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACACTT CTCTTCTTTC TCGAGTCCAT AAGAATAAAT TTTCAATTTT TATCGATAAA 
ATAATAGTTG TTTCAGCCGG CGTGCTGCTG ATGACCTTGG CTGCCAAAGT GCAAATCCCC 
TTCTGGCCGG TCCCAATGAC ACTGCATACC TTTGCGGTGA TGGCGTTCGC GCTGATGCTT 
GGGCCGCAGA TGTCGCTGAC CATCTTCACC ACCTACCTGG CCGTCGGTGC TGTTGGTGCG 
CCCGTGTTTT CCGGCTCCCC GGAACGCGGC ATCGGCCTTG CCTATATGGT GGGGCCAACC 
GGTGGCTATC TTGCCGGATA CTGGCTTGCG GCGTGGCTAA CCGGTTTGAT CGGCCATGGA 
CGCGGGCTGG CGATGCACCT TGTTGCCAGT TTTGCCGGTC TGGCATTGGT CTATGCCGCA 
GGTCTCGTCT GGCTTGCCTT CTTCGTTCCT GCCGCAACAC TGCTGTCCGT TGGGCTCCTG 
CCCTTTCTGG GTGGTGACCT GGTGAAATGT GTTCTTGCGG CGCTGATCGC CAGCCAGTGG 
CCATCAAAGG CAAAACGCCA GCAGGAGACG GAGCAATGA
 
Protein sequence
MDTSLLSRVH KNKFSIFIDK IIVVSAGVLL MTLAAKVQIP FWPVPMTLHT FAVMAFALML 
GPQMSLTIFT TYLAVGAVGA PVFSGSPERG IGLAYMVGPT GGYLAGYWLA AWLTGLIGHG 
RGLAMHLVAS FAGLALVYAA GLVWLAFFVP AATLLSVGLL PFLGGDLVKC VLAALIASQW 
PSKAKRQQET EQ