Gene Avi_2791 details

Gene Information

• Locus tag: Avi_2791
• Symbol: mcpA
• ID: 7385926
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 2323273
• End bp: 2325141
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 643651835
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002550020
• Protein GI: 222149063
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCATTTT GGTTGGTATC CGTGACGCTC TCGACAGAAC AGAGCCTGTT CTCGCGCCTT 
CCTCAGTTCG TCGGAAAGGG ACTATACGTA ATGTTTGGAA TTTCTAGTGT CGCTCGGATG 
CAGACCCAAT CTTTGAAACT GATCACAGCG AATATTATGA TCTCGGATGT TGATCTGAAC 
ATTCGTTATA TGAACGATTC CGTCATGGAA CTACTTAAAG AGGCTGAATC TGATCTTAAA 
AAAGAACTTC CCCGCTTCGA TTTTAACAAA CTCATTGGCA GCAATATCGA TATTTTCCAC 
AAAAACCCAT CCCATCAGCG CAATATGCTG GCTGCTCTCA AAACGCAGCA CCGGGCGACG 
ATCTGGGTTG GTCACCGCGC GTTCGATCTC ATCGTCACAC CTTTGCGGGA AAGTGGAAAA 
ACAACTGGCT TCGTTGTTGA ATGGGCCAAT GCCAAGGAGC GCTTGCAGAA CCTGGATTAC 
CAGGGGCAGA TGATGGCGAT TAGCCGTTCT CAAGGCATTA TCGAGTTTAC CACGGAAGGT 
GAGATCGTTA GCGCCAACGA AAACTTCCTC AAAGCCATTG ATTATAAACT GGACGACATA 
AAGGGTCGTC ACCACAGCAT GCTGGTTGAC CCCGAATACG CAAAATCAGC CGACTACAAA 
GACTTTTGGG CTGGCTTGCG CCGCGGAGAA GTTCAATCGG CAGAGTTTGT TCGCTACGGC 
AGGAACGGAA AGAAGGTGGT TATCAACGCT GCCTATAACC CGATCCTTGA TGCCAAGGGC 
AAGGTTACAA AAGTCGTCAA GTTTGCCACG GACGTGACCG AAAGAGTGAA TGCGGTCAAT 
GCGATTGGCA GCGCCCTGAC GCGGCTGGCG CAGGGTGATC TGACCTTCAC TCTGGACAAC 
CCGTTTGCGC CGGATTTTGA AGAACTGCGC CGCACGATGA ATGAAGCATT GACGCAGATG 
CGCAACACGC TTGGCGCGGT GGCGCATTCA ACCAGCCAGA TCGACAATGG CACGCGCGAA 
ATCAGCCAGA GCGCCGAAGA TCTGTCCAAG CGGACCGAGC AGCAGGCCGC CTCCCTGGAA 
GAGACCGCTG CGGCGCTTGA CGAAATTACC GTGAATGTCT CGAATGCATC AAAACGGGCA 
GAAGAAGCCC GTCATTCGGC ATCGACAGCC AGCGACAATG CGGTGCGCTC TTCAAAGGTG 
GTTGAGGATG CGGTTGGCGC GATGTCGCGC ATTGAAAATT CGTCCAATCA GATTTCCAAT 
ATCATTGGGG TGATCGACGA AATCGCCTTC CAGACCAATC TGCTGGCGCT GAATGCCGGT 
GTCGAGGCCG CTCGTGCCGG TGAAGCAGGC AAGGGCTTTG CCGTGGTCGC GCAAGAGGTT 
CGCGAACTGG CGCAAAGATC CGCTCAGGCT GCCAAGGAAA TCAAGGAACT GATCCGTAAT 
TCTTCAAACG AGGTCAGCAC CGGGGTAAGA CTGGTGAGCG AAACAGGCGA GGCGCTTCGG 
ACGATCCAGC AGAATATCGT TGCGGTCAAT GAACATATGG AGGCCATTAC CAGCTCGGCT 
CGCGAGCAGG CCACCGGCCT TTCCGAAGTC AATGCAGCCG TAAACCAGAT GGACCAGGTA 
ACGCAGCAAA ATGCGGCGAT GGTGGAAGAG ACAAATGCCG CCAGCGCAAC GCTTGCCCAG 
GAAACGGCGC GTCTGCGCGA GTTGATTGAG AAATTCCAAC TGGGCGGTGC CGGTATGCGG 
CCTTCGTCAC GCCAGCTTGG CGCGGCGACT TCAGCACATC GTCCCACGAC ATCGCCCGCA 
CGGGAGTTGA TGTCGAAGGT AGCGGGTTCG GTCGCATCCC AATCCGGCGG CGGCTGGAGC 
GAGTTTTAA 

 

Protein sequence

MSFWLVSVTL STEQSLFSRL PQFVGKGLYV MFGISSVARM QTQSLKLITA NIMISDVDLN 
IRYMNDSVME LLKEAESDLK KELPRFDFNK LIGSNIDIFH KNPSHQRNML AALKTQHRAT 
IWVGHRAFDL IVTPLRESGK TTGFVVEWAN AKERLQNLDY QGQMMAISRS QGIIEFTTEG 
EIVSANENFL KAIDYKLDDI KGRHHSMLVD PEYAKSADYK DFWAGLRRGE VQSAEFVRYG 
RNGKKVVINA AYNPILDAKG KVTKVVKFAT DVTERVNAVN AIGSALTRLA QGDLTFTLDN 
PFAPDFEELR RTMNEALTQM RNTLGAVAHS TSQIDNGTRE ISQSAEDLSK RTEQQAASLE 
ETAAALDEIT VNVSNASKRA EEARHSASTA SDNAVRSSKV VEDAVGAMSR IENSSNQISN 
IIGVIDEIAF QTNLLALNAG VEAARAGEAG KGFAVVAQEV RELAQRSAQA AKEIKELIRN 
SSNEVSTGVR LVSETGEALR TIQQNIVAVN EHMEAITSSA REQATGLSEV NAAVNQMDQV 
TQQNAAMVEE TNAASATLAQ ETARLRELIE KFQLGGAGMR PSSRQLGAAT SAHRPTTSPA 
RELMSKVAGS VASQSGGGWS EF