| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2630 |
|---|
| Symbol | cheD |
|---|
| ID | 7386628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2174470 |
|---|
| End bp | 2175027 |
|---|
| Gene Length | 558 bp |
|---|
| Protein Length | 185 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643651708 |
|---|
| Product | chemotaxis protein |
|---|
| Protein accession | YP_002549895 |
|---|
| Protein GI | 222148938 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1871] Chemotaxis protein; stimulates methylation of MCP proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.100021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTCG TTTGGAATGC TCCAGTGGCT TCACGAATGG ATCTGCCCAA GGGTCGGGTG
ACCATTTCGC AGGGACAATT TGCCGTCAGC GACGATCCCG ATACGGTGAT GACGACGGTG
CTTGGCTCCT GTGTCGCTGC CTGTATTCGC GATCCCGTGC TGGGTCTCGG CGGTATGAAT
CATTTCGTCT TGCCGGGTCC GGTTGCCAAG GGCATGAGCA AAAGCGAGGC GGCGCGATAT
GGCTGCCAGT TGATGGAGCT TCTTGTTGAC GGGTTGCTGG CGCGTGGCGC AAATGTCTGG
CGTTTGGAGG CAAAGATTTT CGGTGGCGCC AGTCCCGGCA ACTCCTTCTA TAATGTAGGG
GCGCGCAATT TTGATTTCGC GCGGCAGTTT CTGGCAACGA ACGGTATTGC GGTCATTGAG
GAAAATGTCG GCGGCCCTTA TGGCTGCAAG CTCGAATATT GGCCCTATTC GGGCAAGACC
AATTGCGTGC CGCTCAGCGG ACGTATGGGT GTGAAGCCCA AGGTCACGGC AATTCGGTCG
CCAGCTCAGA AGGTGTGA
|
|---|
| Protein sequence | MSFVWNAPVA SRMDLPKGRV TISQGQFAVS DDPDTVMTTV LGSCVAACIR DPVLGLGGMN
HFVLPGPVAK GMSKSEAARY GCQLMELLVD GLLARGANVW RLEAKIFGGA SPGNSFYNVG
ARNFDFARQF LATNGIAVIE ENVGGPYGCK LEYWPYSGKT NCVPLSGRMG VKPKVTAIRS
PAQKV
|
|---|
| |