| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2599 |
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| Symbol | nrdE |
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| ID | 7386607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2147130 |
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| End bp | 2150900 |
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| Gene Length | 3771 bp |
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| Protein Length | 1256 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651686 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_002549874 |
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| Protein GI | 222148917 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATCG AACGCCGTTT CACCAAGCCC GGCCAGTCGC CCTATGCGGA GATTGAATTC
CGCAAGGCGG TAAGCGAAAT CAAGAACCCG GATGGCTCTG TCGTCTTCCG GCTGGCCGAT
ATCGATGTGC CCGCGCAGTT CAGCCAGGTG GCGGCCGATA TTCTGGCCCA GAAATATTTC
CGCAAGGCTG GCGTGCCGAA GATCTTGAAA AAGGTCGAGG AAAACGATGT TCCGTCTTTC
CTGTGGCGGT CGGTTGCCGA TGAAAAGGCC ATGAAGGATC TGCCTGAAGA CGAGCGCTAC
GGTTCGGAAA CCGATGCGCG TCAGGTCTTT TCGCGTCTGG CTGGCACCTG GGCCTATTGG
GGTTGGAAGG GCAAATATTT CACTACAGAA GAAGACGTAC TCGCCTTCCG CGATGAGCTG
GCCTATATGC TCGCCACCCA GCGCGTCGCG CCGAATTCCC CGCAATGGTT CAACACTGGC
CTGCATTGGG CCTATGGCAT CGATGGTCCC GGCCAGGGCC ATTTCTATAT CGATCCTTTC
ACCGGCAAGC TCACCAAGTC CAAGTCGGCC TATGAACATC CGCAGCCGCA TGCCTGCTTC
ATCCAGTCCG TCGAAGACGA TCTGGTCAAC GAAGGCGGCA TCATGGATCT GTGGGTGCGT
GAAGCGCGCC TGTTCAAATA CGGTTCCGGC ACCGGCTCCA ACTTCTCCCA TCTGCGCGGC
GAAGGCGAAA AGCTGTCGGG CGGCGGTAAA TCGTCCGGCC TGATGAGCTT CCTGAAGATC
GGCGACCGTG CCGCTGGTGC CATCAAGTCT GGCGGCACCA CACGCCGTGC GGCCAAGATG
GTGGTTGTGG ATATCGACCA TCCTGATATT GAAAACTACA TCGACTGGAA GGTGAAGGAA
GAGCAGAAGG TTGCAGCGCT CGTCACCGGC TCCAAGATCG TCGCCAAGCA TCTGAAGGCG
ATCATGAAGG CCTGCGTCAA TTGCTCAGCC GATAACGACG CTTGCTTCGA CCCCAATGAA
AACCCGGCCC TGAAGCGCGA AATCCGTGCT GCCAAGAAGG ATATGGTGCC GGAAAACTAC
GTCAAGCGGG TCATCCAGTT CGCCCAGCAG GGCTATAAGG ATCTGGAATT CAAGACCTAT
GACACGGATT GGGATTCGGA AGCCTATCTG ACTGTCTCGG GCCAGAATTC CAATAATTCC
GTTTCGCTGC GGGATGACTT CCTGCGGGCT GTCGAAGACG ATGGCAACTG GAACCTGACC
GCCCGCCGCG ATGGCCGGGT GATGAAGACC CTGAAGGCCC GCGATCTCTG GGAAAAGATT
TCCTACGCTG CCTGGGCGTC TGCCGATCCG GGCCTGCATT TCAACACCAC CATGAACGAC
TGGCACACCT GCCCGGCGGC TGGCCCGATC CGCGCTTCCA ATCCGTGCTC GGAATATATG
TTCCTGGACG ACACCGCCTG CAATCTGGCT TCGCTGAACC TGTTGCAGTT CAAGGATGCC
GATACCAAGA AAATCGACAT TGCCGATTAC GAACATGCCG TTCGCCTCTG GACCGTCGTG
CTCGAAGTCT CCGTGATGAT GGCGCAGTTC CCTTCGCGCC AGATTGCTGA ACTGTCCTAT
GAATACCGCA CGCTCGGCCT CGGCTATGCC AACATTGGCG GCCTGCTGAT GTCGACTGGC
ATTCCCTATG ACTCGGCTGA AGGCCGCGCC ATCTGCGGTG CGCTGAGCGC CATCATGACC
GGCGTTTCCT ATGCCACGTC GGCTGAAATT GCGTCTGAGC TTGGTCCGTT CCCGGGCTAT
GCGCCAAACC GCGACAACAT GCTGCGCGTT ATCCGCAACC ATCGCCGCGC CGCCCATGGC
CTGTCTGACG GCTATGAGGG TCTTGCCGTC GATCCCGTGC CGCTGGTTCA TGCCGAATGC
TCTGATCCTG CCCTGATTGC CCATGCCAAG GCGGCCTGGG ACAAGGCGCT GGAACTGGGC
GAACAGCATG GCTACCGCAA TGCTCAGGTC TCCGTCGTTG CCCCGACCGG CACGATCGGC
CTGGTTATGG ATTGCGACAC CACGGGCATT GAGCCGGATT TCGCCCTGGT GAAGTTCAAG
AAGCTGGCCG GTGGCGGCTA TTTCAAAATC ATCAACCGCG CCGTTCCCGA AGCCCTGCGC
ACGCTTGGCT ACACGGAAAG CCAGCTTGCC GAGATTGAGG CCTATGCTGT CGGCCACGGC
AATCTCAACC AGGCACCGGG CGTCAACCCC GGCTCGCTGA AAGCCAAGGG CTTTACCGAC
GAGAAGATCG AGGCGGTCAA CGCTGCTCTG GGCGCTGCCT TCGACATCAA GTTCGTCTTT
AACCAATGGA CCTTGGGCGC TGATTTCCTG AAGGAAACGC TTGGAGTCAG CGCTGAACAA
CTGACCGACA TGAGCTTCAA CCTGCTGGAG CATCTGGGCT TTGCCAAGAA GGATATCGAG
GCTGCCAATA TCCATGTCTG CGGGGCGATG ACGCTGGAAG GCGCGCCGTT CCTGAAGAAG
GAACATCTGG CGGTCTTCGA TTGCGCCAAT CCTTGCGGCA AGATCGGCAA GCGGTATCTG
TCTGTCGAAA GCCATATCCG CATGATGGCA GCGGCCCAGC CGTTCATTTC CGGGGCGATC
TCCAAGACCA TCAACATGCC GAACGAGGCA ACGGTGGAAG ATTGCGGCGC AGCTTACATG
CTGTCCTGGA AACTGGCGCT GAAGGCCAAT GCGCTGTACC GCGATGGCTC CAAGCTCAGC
CAGCCACTGA ATTCCTCGCT GATCGAGGAT GAGGATGATG AGGACGCGGT TGAGGAACTG
TTGGCCCAGC CGCAGGCTGC CCAGGCCGTG ACCATTACCG AGCGTATCGT TGAGCGCATT
GTCGAGCGGA TCGTCCGCGA ACAGGAAAAG CTGCCGACCC GCCGCAAGGG CTATACCCAG
AAGGCCAAGA TCGGTGGTCA CACCATCTTC CTGCGCACCG GCGAATATGA CGATGGCCGT
CTCGGTGAAA TCTTCCTTGA CATGAACAAG GAAGGCTCGG CTCTGCGCGC CTTCATCAAC
AACTTCGCGA TTTCGGTATC GCTCGGCCTG CAATATGGCG TGCCGCTGGA AGAATATGTT
GACGCCTTCA CCTTCACCAA GTTCGAACCG GCGGGCATGG TAACCGGCAA CGACGCCATC
AAGAACGCCA CGTCGATCCT CGACTACGTG TTCCGCGAAC TGGCGATCTC CTATCTGGGC
CGCAACGATC TGGCTCATGT CGACACGTCC GACTTCTCCA CCACGGCGCT TGGCCGCGGC
GTGAAGGAAG GCAAGGCCGA TGTGGTCTCC AAGGGCCTGA CCCGCGGCTA CAAGCCGACC
CTGGTCTCCA GCAGCCAGGC CGGAACCGCC GAACCCCGTG GTGCTGTAAC CGGCACTCCG
GCCAAGGCCT CGGGCAATGT TGCAGCCTTT TCCGGCAATG CAGCCCGCAA GCTGGAAGTG
ACGACAGCCA TTTCCACCTC CGAAGTCGTG TCCTTCAAGC GCGATTACGA GGAACGGGCC
GCCGAACTGG TGGAAGACAT GGTCACGGAA ACCTTGTTCT CCGACGCCGC CACCGACGAA
GCCGAAGCCG CCAAGGCCGA AGCCAAGAAA GTAGAAGCCG CCCGCCGCAT GCGCTCCATC
GCCCAAGGCT ATACCGGCAA CATGTGCTCC GAGTGCCAGA ACTTCACGAT GGTACGGAAT
GGGACGTGTG AAAAGTGCGA CACTTGCGGA AGCACGAGTG GGTGCAGCTG A
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| Protein sequence | MRIERRFTKP GQSPYAEIEF RKAVSEIKNP DGSVVFRLAD IDVPAQFSQV AADILAQKYF
RKAGVPKILK KVEENDVPSF LWRSVADEKA MKDLPEDERY GSETDARQVF SRLAGTWAYW
GWKGKYFTTE EDVLAFRDEL AYMLATQRVA PNSPQWFNTG LHWAYGIDGP GQGHFYIDPF
TGKLTKSKSA YEHPQPHACF IQSVEDDLVN EGGIMDLWVR EARLFKYGSG TGSNFSHLRG
EGEKLSGGGK SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VVVDIDHPDI ENYIDWKVKE
EQKVAALVTG SKIVAKHLKA IMKACVNCSA DNDACFDPNE NPALKREIRA AKKDMVPENY
VKRVIQFAQQ GYKDLEFKTY DTDWDSEAYL TVSGQNSNNS VSLRDDFLRA VEDDGNWNLT
ARRDGRVMKT LKARDLWEKI SYAAWASADP GLHFNTTMND WHTCPAAGPI RASNPCSEYM
FLDDTACNLA SLNLLQFKDA DTKKIDIADY EHAVRLWTVV LEVSVMMAQF PSRQIAELSY
EYRTLGLGYA NIGGLLMSTG IPYDSAEGRA ICGALSAIMT GVSYATSAEI ASELGPFPGY
APNRDNMLRV IRNHRRAAHG LSDGYEGLAV DPVPLVHAEC SDPALIAHAK AAWDKALELG
EQHGYRNAQV SVVAPTGTIG LVMDCDTTGI EPDFALVKFK KLAGGGYFKI INRAVPEALR
TLGYTESQLA EIEAYAVGHG NLNQAPGVNP GSLKAKGFTD EKIEAVNAAL GAAFDIKFVF
NQWTLGADFL KETLGVSAEQ LTDMSFNLLE HLGFAKKDIE AANIHVCGAM TLEGAPFLKK
EHLAVFDCAN PCGKIGKRYL SVESHIRMMA AAQPFISGAI SKTINMPNEA TVEDCGAAYM
LSWKLALKAN ALYRDGSKLS QPLNSSLIED EDDEDAVEEL LAQPQAAQAV TITERIVERI
VERIVREQEK LPTRRKGYTQ KAKIGGHTIF LRTGEYDDGR LGEIFLDMNK EGSALRAFIN
NFAISVSLGL QYGVPLEEYV DAFTFTKFEP AGMVTGNDAI KNATSILDYV FRELAISYLG
RNDLAHVDTS DFSTTALGRG VKEGKADVVS KGLTRGYKPT LVSSSQAGTA EPRGAVTGTP
AKASGNVAAF SGNAARKLEV TTAISTSEVV SFKRDYEERA AELVEDMVTE TLFSDAATDE
AEAAKAEAKK VEAARRMRSI AQGYTGNMCS ECQNFTMVRN GTCEKCDTCG STSGCS
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