Gene Avi_2480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2480 
Symbol 
ID7385849 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp2042548 
End bp2043660 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content58% 
IMG OID643651592 
Productmembrane protein 
Protein accessionYP_002549780 
Protein GI222148823 
COG category[S] Function unknown 
COG ID[COG4872] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.404247 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGTATC GGGCGAAACT GAAGAAAGAT CTTGATCGCT GGACCGGCAT GGGCCTGATC 
AGCAAACAGG CCGCCGAGGC GATGATCGAG GATCATGATG GCCGGGCGGG CAATTTCAAT
ATCGGCGGCG TTTTGCTCAT GCTGTCGGCA GTGCTGGTCT CTGCCGCCAT CCTGCTGCTT
GTGGCGGCCA ATTGGCAGGC CATTCCGCGC CTGGTGAAGG TGTCTAGCCT GATTCTGCTG
ATCTGGGGCT TTCATGGCGG CGCTGCCTTC TGCCTCGCTC AAGGGCGGCA GGCGTCGGGT
CATGCCCTTC TGGTGCTGGG AGCAGCCAGT TTCGGCGCAG CACTGTCGCT GGTTGGGCAG
CTGTATCACC TGTCGGGTGA CCTTCTCGAT CTGCTTTATC TGTGGATCGG TATGGCAAGC
CTGTCCTGCC TATTGTTTCG CTCCGGTGCG ATGGCGGCTT TCGTTGGTGT TCTGGCGCTG
GGCTTGGCGG CTGCAACCCT TGACCAGTTT GATTTCTCCT GGACGCTGGA GGCAGTTTGG
ACACCGCCCC TTTTGGCTGT GCTCGTTACA GGCTTGGCAC TTTTCACCGG AAACATCCGG
GTTCAGCATA TATCCGGCCT GCTGATTCTT GGCTGGCTTG CCTGGATCTA TGCGCAGATC
ATGCAGCCAG GCCTTGCCAT GGCCTATGTG GCTTTAGGGG TGGCCGCATT CGCAGCGTCA
GCCTTGCCGC TGCTCGCCCG GTATATGTCC GTGCAGATTG CCGGTTTTCA TGCCTTGCTG
CTGGCGGCAA TGGGTCTTTT CATCCTCAAT ATTGAGTTTG ATCACGGTTT GCCACTGGCG
CTGGTGGCCG TCACTGCGGT TGGTATCTCC ATTGCGGCCC TTGTGCTTCG TGGGCGTCAC
GACGGTGTCG TGAGGGCGCT GGCTTATCTG ATTTTCGCAG GCGAGATCCT CTATCTGTCC
TTCACAACAA TTGATTCTCT GTTGGGGACA TCGGGCTTTT TCCTGATCGC CGGTGTGATT
GTCGCTTTGC TGGCCCTCGG CGTCAGCCAG ATGGAAAAGC TGCTGGGTAC GCGCAAGCGT
CCGATGGCGG TTGAAGGACG GGAGCGGTCA TGA
 
Protein sequence
MMYRAKLKKD LDRWTGMGLI SKQAAEAMIE DHDGRAGNFN IGGVLLMLSA VLVSAAILLL 
VAANWQAIPR LVKVSSLILL IWGFHGGAAF CLAQGRQASG HALLVLGAAS FGAALSLVGQ
LYHLSGDLLD LLYLWIGMAS LSCLLFRSGA MAAFVGVLAL GLAAATLDQF DFSWTLEAVW
TPPLLAVLVT GLALFTGNIR VQHISGLLIL GWLAWIYAQI MQPGLAMAYV ALGVAAFAAS
ALPLLARYMS VQIAGFHALL LAAMGLFILN IEFDHGLPLA LVAVTAVGIS IAALVLRGRH
DGVVRALAYL IFAGEILYLS FTTIDSLLGT SGFFLIAGVI VALLALGVSQ MEKLLGTRKR
PMAVEGRERS