Gene Avi_2460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2460 
Symbol 
ID7386994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp2023173 
End bp2023868 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content57% 
IMG OID643651576 
Producttranscriptional regulator TetR family 
Protein accessionYP_002549765 
Protein GI222148808 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.337543 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTCGTCTC TCGTCAAGCC CCAATTGTCC CGGAGCAGAA TTTTGGCATC GGCTGCCTCG 
AACACATCTT CGCCGAAGGC ACCCAAAATG CGTGCGGATG CCCAGCGAAA CCGGGAGAAA 
TTGGTCGAGG TGGCAGCCCT CGCCTTTGCC GAAAAAGGCG TTGAAACCTC GCTTGAGGAT 
ATCGCCCGGC AGGCAGGTGT CGGCATCGGC ACGCTGTACC GCCATTTTCA GACGCGCGAA 
CATCTCGTTG AGGCGGTTTA CCGGCGCGAA TTGTCAAGCC TGGCAGAAGC AGCGACGGAG 
CTTGCAACCA CGCTGCCCGC CGATATGGCG CTGGAGGAAT GGATGCGGCG TTTTGTGGGC 
TATATCGCCA CCAAACGTGG CATGGCCAAT AGTTTGAAAA TTCTTATGAA TTCCAATTCC 
AGCCTGTTTG CGGAGGGGTC TGGCCTAATC CGCGATGCGG TAGCCCGGCT GATGACAAAG 
GCGCAGGAAC AGCAGCTTAT CCGCGACGAT ATTGGCGAGG CTGACCTGCT GCACGCTTTG 
TCCAGTATCT ATTCCATGCC CGACACCCCG GAATGGCGCG ACCGTTCACA TCGGCTGATC 
GGATTGCTGA TGGATGGATT GCGCCATAAA GGCCATCCAA AAGCTGACGG CGTGGACCGA 
AACCTGGAAA CTGAAAACAG CTTCCAGGAT CGATAG
 
Protein sequence
MSSLVKPQLS RSRILASAAS NTSSPKAPKM RADAQRNREK LVEVAALAFA EKGVETSLED 
IARQAGVGIG TLYRHFQTRE HLVEAVYRRE LSSLAEAATE LATTLPADMA LEEWMRRFVG 
YIATKRGMAN SLKILMNSNS SLFAEGSGLI RDAVARLMTK AQEQQLIRDD IGEADLLHAL 
SSIYSMPDTP EWRDRSHRLI GLLMDGLRHK GHPKADGVDR NLETENSFQD R