Gene Avi_2446 details

Gene Information

• Locus tag: Avi_2446
• Symbol: ppiB
• ID: 7386072
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2012489
• End bp: 2013067
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 643651565
• Product: peptidyl prolyl cis-trans isomerase
• Protein accession: YP_002549754
• Protein GI: 222148797
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.877239
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTCA TGTCTCTTGC TTTCGCGGGC CTGCTCGCGC TTTCCTCCCT TGCCACCAAC 
GCAATGGCCC AGGCCGCCTC TGGTGATAAC ACCATGACCA TCCAGCTGAA GGACGGCCCC 
GTCGTCGTAC AGCTGATGCC GGAGGTCGCA CCAAAGCATG TCGCGCAGAT CAAGACGCTG 
GTGAGCCAGG GTCAATATGA CAACGTCGCC TTTCACCGCG TCATCGAGGG CTTCATGGCC 
CAGACCGGCG ACGTGCAATA TGGCAATATG AAATCCGGCT TCGACAAGAG CCGCGCAGGC 
ACCGGCGCTT CCAAGCTGCC CAATATTCCC GCTGAGTTTT CCAAGACACC TTTTGTTCGT 
GGCACAGTCG GCATGGCCCG TTCCCAGGAT CCGAATTCTG CCAATTCGCA ATTTTTCATC 
ATGTTCGGTG ACGGCAGCTT CCTGAACGGC CAATATACCG CAGTCGGCAA GGTTGTCTCC 
GGCATGGAAT TTGTCGATAA GATCAAGCGC GGCCAGGGCG GCAATGGTGA GGTCAGTGAC 
CCCGACCGGA TGATCAAGGT CACCCTCGGA AAGAAGTAA 

 

Protein sequence

MKLMSLAFAG LLALSSLATN AMAQAASGDN TMTIQLKDGP VVVQLMPEVA PKHVAQIKTL 
VSQGQYDNVA FHRVIEGFMA QTGDVQYGNM KSGFDKSRAG TGASKLPNIP AEFSKTPFVR 
GTVGMARSQD PNSANSQFFI MFGDGSFLNG QYTAVGKVVS GMEFVDKIKR GQGGNGEVSD 
PDRMIKVTLG KK