| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2411 |
|---|
| Symbol | |
|---|
| ID | 7386044 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1982335 |
|---|
| End bp | 1984083 |
|---|
| Gene Length | 1749 bp |
|---|
| Protein Length | 582 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643651537 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002549726 |
|---|
| Protein GI | 222148769 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.100681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTCTCCG GCCTGGTTGC CAGCCTTCCC GGTCCAGATG CGCCTGGCCT GCTTGGGGAA
ATCCTGCTGA AACTGGGTTC TGTCGAGGGT GCGGTCGAAG CCTTTGAATT TGCGGCAAGC
CGGATGCCGG AGCCGGAGGG ATCGCGGTTG CGCGCTCATG CCGCATTTCT GGCGCTGGAT
ACAGAGGCGA CCTACCCGCC GGAGCGCATG AATGCGTTGC TCTCCACCTT GGTCGCTAGC
GAGAGGCCGG AGCATTGGCA AAAGGCCGGT GAAATCCTTT CGGCAGACAG CCGCAATCCG
CTGACGCTAA CCGTGTTGCA GAAACTGCGT CGCCTGAGAC CGCAAGACGA TAACGTGCTG
ATGCTGTTGC TGCGGGTGGC GCGTGAACAA TGCCATTATC CGGTTCTGTT GGAAGAAGAG
CCGCTGCTGC GGGAAAAATT GGCACGCGGC GAAATTGCGT GCCTTACCCA GGAGCCGCCA
CATGCCAGCC TGATGTGGGA AGACGATGAG CGGCTGAACC GTCTGGCCTC GATGATCAAC
GGCTTCCCGC CCGTCACTCC GGCCATGCAG GCCTTGCGGC ATAGCCAGCC ACATAGCTGG
GGCGAAAAGA TCCGTATTGG CTATCTGAGC TGCGATTATT GGGACGATCA CGCCACCATG
CGGCTGCTGC GCTCGGTGAT GACGGCCCAT GATGCCTCGC GCTTCGATGT CACGCTGTTT
TGCTACACGT CCGACCAGTT TCTGGCCTAT GACAATGGCG GACGCCAGCA ATGGGGCAGG
ATCGTTTCGA TCACCGATAT GAGCGATGAT CAGGCGGCGG CCAGGATTCG GGCGCATAAT
ATCGATATTC TTGTCGATCT AAAGGGCCAT ACGCGCGGCA GTCGCTCTGC CCTGATGAAC
AGGCCGCTGG CGCCGGTGCA TGTCCAATGG CTGGGCTTTC CCGGCACCTG TATCGAGATC
GATTGCGATT ATGCGATTGG CGACCGGTTT GTGCTGCCCG ACAGTTCAAA GCCCCATTAC
CATGAGAAAT TCTGCCGTCT GCCGGAATGC TACCAGCCGA ACGACCCCAT CTATCGTCCG
CTGGCCGATG CCGCCAGTCG CATGGCGCTT GGCCTGCCGG CTGACCGCGT GGTGATTGGC
GCGTTCAACA GCCAGCGCAA GAACTCGCTG CTCACCATGC GGCTTTGGGC CGAGGTGCTC
AAGGCCAATC CCAAGGCGCT GCTCTGGCTG ATGATCGACG GCCATGGCGC GCGTCAGGCA
ACCGCTGCCC ATTTCAAGAC GCTGGGCGTC AAGCAATCGC AATTGCTGTT TGCGCCGAAA
ATGGCCTATG CGGCGCATCT GGCCCGGGCG CAGGCGGCTG ATTTCGCCAT CGATACGTTC
CCCTGCAATG GTCACACGAC GACATCTGAT ATGCTTTGGG CCGGGTTGCC AGTGATGACC
ATGCAAGGCC GTAATTTTGC GTCCCGCGTG TCGGAAAGCC TGCTGAACGC TATCGGCCTG
CCGCAACTGG TGGCAAGCAA CGAACAGGAT TTCGTGGCGC TGGCAACAGC ACTCATCAAC
GACCCGGAAA AGCTGCGCGC CCTGAAACAA CATTTGGTCG ATCAACGCTT CAAGACGCCG
TTGTTTGATG CAAAGCGCTT TTGCCGCCAC CTTGAAACCG CCTATGAAAT GATGGCGGAG
CGTGCCAAAG CGGGATTGTC ACCAGACCAT TTCGATGTTC CCCATACAAA AGAAAGCCAC
ATGCCATGA
|
|---|
| Protein sequence | MVSGLVASLP GPDAPGLLGE ILLKLGSVEG AVEAFEFAAS RMPEPEGSRL RAHAAFLALD
TEATYPPERM NALLSTLVAS ERPEHWQKAG EILSADSRNP LTLTVLQKLR RLRPQDDNVL
MLLLRVAREQ CHYPVLLEEE PLLREKLARG EIACLTQEPP HASLMWEDDE RLNRLASMIN
GFPPVTPAMQ ALRHSQPHSW GEKIRIGYLS CDYWDDHATM RLLRSVMTAH DASRFDVTLF
CYTSDQFLAY DNGGRQQWGR IVSITDMSDD QAAARIRAHN IDILVDLKGH TRGSRSALMN
RPLAPVHVQW LGFPGTCIEI DCDYAIGDRF VLPDSSKPHY HEKFCRLPEC YQPNDPIYRP
LADAASRMAL GLPADRVVIG AFNSQRKNSL LTMRLWAEVL KANPKALLWL MIDGHGARQA
TAAHFKTLGV KQSQLLFAPK MAYAAHLARA QAADFAIDTF PCNGHTTTSD MLWAGLPVMT
MQGRNFASRV SESLLNAIGL PQLVASNEQD FVALATALIN DPEKLRALKQ HLVDQRFKTP
LFDAKRFCRH LETAYEMMAE RAKAGLSPDH FDVPHTKESH MP
|
|---|
| |