Gene Avi_2410 details

Gene Information

• Locus tag: Avi_2410
• ID: 7386043
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1980464
• End bp: 1982338
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651536
• Product: hypothetical protein
• Protein accession: YP_002549725
• Protein GI: 222148768
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.361804
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGTTC TGGTGGATGA GATGGGTTCG CAAGCCTCGG ATCTCGACCT GAGGATTCTT 
GCGGCCAAAA CTCTGGAATC GGCAGGCAAA ATCATTGATG CCGCACAAGC CTTCGTTGAT 
CTCGCAGAGA GTGTCGCATC GTTTGATCCC TCCGCCCAGG CGGGGTTTCT CGGCCATGCG 
GCGCGTCTCT ATCTAGCGGC CATGCAGCAG GAAAAGGCCG TTGCTCTTGC CTTGAACAGC 
CTCGCAATTG GCCCCGCGAC CTTGGACGCT GCCTATGTGG TGCTGAAATC TGGAACTGTT 
CCTCTGTCCA GCGCGGCAAA AGACGCCCTG ATCGCCACGC TGGGGACAAG CAATGATATC 
GATGATCTGG TGCTTGCCGC CCTGTCGATC GGCAATGACA TCCACCATCC ACTCTGCCTG 
CCGATTTATA CAAGCCTGCG GCAGTTGCGC CCGGACCTGC CGAAAGTGCG CATGGCGCTG 
GTGCAGATTG CCCGGATGCA ATGCAATTAC GACATCCTGA CAGCCGAGGA GGCACTGCTG 
CACCGGGATA TCGCGGCTGG CAAGGTGGAT TTTCTCGCCA TGGAATCGCC CCATGCCAAT 
CTGATGTGGC TGGCGGATGA ACGCCTGAAC AGGCTTGCCC GTTACTATAC GATGACACAG 
GCGATGACGG CGGCCTCACA GACAACACGG CGCAGTCTGC CGCATGTCTG GGGCGAAAAG 
CTGAGAATTG GCTATCTTTC CGGCGATTTC TGGGACAATC ACGCCACGAT GCGTTTGCTG 
CGCAGCGTAT TGACCAGCCA TGACACCAGC CGTTTCGAGA TCTTTCTGTT TTGCCACACG 
CCTCGCCACC TCGTCGATAT CGATAAGGGC GGTCGTCAGC AATGGGGGGC GATCACCTCG 
ATTGCCGACC AGACTGACGA TGAGGCAGAA GCGACGATCC GGGCCATGAA GATCGACATC 
ATGGTCGATC TGAAAGGCCA CACACGCGAC AGCCGCTCCG GGCTGATGAA CCGCCCTCTT 
GCACCGGTTC ATGTCGCGTG GCTGGGCTTT CCCGGCAGTT GTTGCGATGT CGATTGCGAT 
TACGTCATTG GCGACCGTAT AGTGCTGCCG GATAGCGCTA AGCCTCACTA TCACGAGAAA 
TTCTGCCGAC TGCCGGAAAG CTACCAGCCG AACGATCCGT TTCATCGTCC CTTGCCGTCC 
GCTTCGTCCC GCATGGCGCT TGGCCTGCCT GCGGACAGAG TGGTGATCGG TGCCTTCAAT 
AGCCAGTCGA AAAACACGCC GGAAACCTTG CGGCTTTGGG CGCGCATCCT CAAGGCCAAT 
CCAACGGCTC TGCTCTGGAT GATGGTCGAT GGCCATAGCG CTCGCCAATC CACCGCCGCC 
TTCTTCAAAT CGCTTGGTGT GAAGCAATCG CAACTGCTGT TTGCCCCGAA AATGCTGTAT 
GAAAACCATA TCGCCCGCGC CCAGGCTGCC GATTTTGCCA TCGATAGTTT TCCCTATAAC 
GGCCACACGA CCACCTCGGA TATGCTGTGG GCGGGCCTGC CTGTTATAAC GAAGCGGGGT 
ACGAATTTCG CGTCTCGCGT CTCGGAAAGC CTGTTGAAAG CCATCGGTCT CGATGAGCTG 
GTGGCGCGAG ACGAAGACAA TTTCGTCGAG CTTGCCACGG TAATGATCAA TGATCCCGCC 
AGGATTGCCC GATTGAAGGC GCATATCGCC GAACAACGGT TTATAGCGCC TTTGTTTGAT 
GCGACGCGGT TTTGCCACCA TCTGGAGGCG GCTTATGACA CCATGGCAGA CTGCGCCAAG 
GCGGGCCTTA CACCGGATCA TTTCGATGTC GTAGCCCTGC CCCGTGATGG CGCCAGTTTT 
CAACGCGCCT CGTAG 

 

Protein sequence

MTVLVDEMGS QASDLDLRIL AAKTLESAGK IIDAAQAFVD LAESVASFDP SAQAGFLGHA 
ARLYLAAMQQ EKAVALALNS LAIGPATLDA AYVVLKSGTV PLSSAAKDAL IATLGTSNDI 
DDLVLAALSI GNDIHHPLCL PIYTSLRQLR PDLPKVRMAL VQIARMQCNY DILTAEEALL 
HRDIAAGKVD FLAMESPHAN LMWLADERLN RLARYYTMTQ AMTAASQTTR RSLPHVWGEK 
LRIGYLSGDF WDNHATMRLL RSVLTSHDTS RFEIFLFCHT PRHLVDIDKG GRQQWGAITS 
IADQTDDEAE ATIRAMKIDI MVDLKGHTRD SRSGLMNRPL APVHVAWLGF PGSCCDVDCD 
YVIGDRIVLP DSAKPHYHEK FCRLPESYQP NDPFHRPLPS ASSRMALGLP ADRVVIGAFN 
SQSKNTPETL RLWARILKAN PTALLWMMVD GHSARQSTAA FFKSLGVKQS QLLFAPKMLY 
ENHIARAQAA DFAIDSFPYN GHTTTSDMLW AGLPVITKRG TNFASRVSES LLKAIGLDEL 
VARDEDNFVE LATVMINDPA RIARLKAHIA EQRFIAPLFD ATRFCHHLEA AYDTMADCAK 
AGLTPDHFDV VALPRDGASF QRAS