Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2290 |
Symbol | intD |
ID | 7387160 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1879238 |
End bp | 1880278 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643651457 |
Product | phage-related integrase |
Protein accession | YP_002549646 |
Protein GI | 222148689 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.306481 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCGTCG AGCTGAAGGG ACTGCACAAA ACAAGCAAAC TTCTCGCTGA CGGCAGCAAA CGGGACTATT ACTATGCCTG GAAAGGCGGC CCGCGCCTTA AAGAGAAGTA TGGCACACCA GCGTTTGCAG AAGAATTCCG ACAGGCGACC CGCGATAGAT CCGCTCCGGA TGCCGACACG CTGGCCTATG TGATCTCACT GTATAAACGT ATGGAGCTGC CGAGGCTGAA ACCCTCTACC CGCAGCACCT ATCTTCCTTA TCTAAAAAAC ATAGAAATAG AGTTCGGCGA TATGGACATC CGCGCCGTCG AGGCAACCGG CTCGCGCGCC GTCTTTCTCG AATGGCGCGA CACGATGGCC ACGACCCCTC GCGCCGCTGA TATCGCATGG TCCATTCTGC AACGGATTAT GGCGTTCGGC GTGCATATGG AAAAGCTGAA ACGCAACCCC TGCACAAATG CCGGTCGGCT TGCCGAATCT GGCACGCGCC GGGAAATCAT TTGGACCCCG CCGGATCTGT CCCGTTTCCG TGCCGTCGCG TCCCGCCAGC TGGCCGATGC CTTGCTGCTG GCAATTTGGA CCGGTCAACG CCAGGGCGAC CTATTGAAAC TGCAATGGTC CGCCTACGAT GGGAAACACA TCCGCCTCAA ACAAGGCAAG ACTGGTCGGC GCGTTGCCAT TCTCGTTTCC GGTACCCTTG GCAAAATGCT GGACAGGCTG AAGGCAGAAA ACGAAGCCCG CAAAGTCCAG TCGTTGACGA TCCTGACCAA CCAGCGCGGC CGGACATGGA CCAGCAGCGG CTTCAAGACA TCATGGGGAA AGGCAGCAAA AAAGGCCGGC ATAACCGGCC TGACATTCCA CGATCTACGC GGAACCTTCA TCACCATGGC CCGGCGAGCT GGCGCCTCGA TAGAGGATAT CGCCAAAGCC TCCGGCCACA CCACGAAGGA CATTCATAGC GTGCTCGAAA CGCACTATCT GGCCGATGAT CTGGAGCAAG GTGACGTGGT GATTTTAAAG CTCGAAGCGA ATGAAAAATG A
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Protein sequence | MRVELKGLHK TSKLLADGSK RDYYYAWKGG PRLKEKYGTP AFAEEFRQAT RDRSAPDADT LAYVISLYKR MELPRLKPST RSTYLPYLKN IEIEFGDMDI RAVEATGSRA VFLEWRDTMA TTPRAADIAW SILQRIMAFG VHMEKLKRNP CTNAGRLAES GTRREIIWTP PDLSRFRAVA SRQLADALLL AIWTGQRQGD LLKLQWSAYD GKHIRLKQGK TGRRVAILVS GTLGKMLDRL KAENEARKVQ SLTILTNQRG RTWTSSGFKT SWGKAAKKAG ITGLTFHDLR GTFITMARRA GASIEDIAKA SGHTTKDIHS VLETHYLADD LEQGDVVILK LEANEK
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