| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2112 |
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| Symbol | pdhA |
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| ID | 7386909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1732893 |
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| End bp | 1733939 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643651318 |
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| Product | pyruvate dehydrogenase alpha subunit |
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| Protein accession | YP_002549513 |
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| Protein GI | 222148556 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | [TIGR03182] pyruvate dehydrogenase E1 component, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.467049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACCGC GCAAAAACGC GACTGCTTCA GGCCGCAAAC CGGCAGCAAA GCCTGTAAAA
GGTGATTTCG CTGTGGGGAC GATTGAAGAA TTCGACCGCG AAAAGGAGCT GAAAGCCTAT
CGCGAAATGC TTCTGATCCG CCGCTTCGAG GAAAAAGCCG GTCAGCTTTA CGGCATGGGC
TTCATCGGCG GTTTCTGTCA CCTCTACATT GGCCAGGAGG CTGTCGTCGT CGGCATGCAG
ATGGCGCTGA AGCTCGGCGA TCAAGTCATT ACCGGCTATC GTGACCACGG CCATATGCTG
GCCTGCGGCA TGAGCGCACG CGGTGTGATG GCCGAACTGA CCGGACGTCG CGGCGGCTTG
TCCAAGGGCA AGGGCGGCTC CATGCACATG TTCTCCAAGG AGAAGCATTT CTACGGTGGT
CACGGCATCG TCGGCGCCCA GGTGTCGCTT GGCACGGGTC TGGCCTTCGC CAACAAGTAT
CGTGGCAATG ACAATGTCTC TCTCGCCTAT TTCGGCGATG GCGCGGCCAA CCAGGGCCAG
GTCTATGAGA GCTTCAACAT GGCGCGCCTG TGGAACCTGC CGGTGATCTA TGTGATCGAG
AACAACCGTT ATGCCATGGG TACCTCCGTT GCCCGCGCCT CGGCGCAGAC GGATTTCTCC
CAGCGCGGCG TGTCCTTCAA CATTCCCGGC TTCAAGGTGG ATGGCATGGA TGTGCGCGCC
GTCAAGGCGG CTGCCGTGCA GGCGGTCGAG CATTGCCGCG CCGGCAAAGG CCCGGTCATC
CTGGAAATGG AAACCTATCG CTATCGCGGT CACTCCATGT CCGACCCGGC CAAATACCGC
TCCAAGGACG AAGTGCAGAA AATGCGCTCC GAGCATGACC CGATCGAACA GGTCCGGCTG
CGTCTCCTGG AAAAGGGTTG GGCCAGCGAA GACGATCTCA AGCTGATCGA CAAGGACGTG
CGCGATATCG TCGCCGACAG CGCCGATTTC GCCCAAGCCG ATCCGGAGCC GGATGCATCC
GAGCTCTACA CCGACATCCT GTTGTAA
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| Protein sequence | MAPRKNATAS GRKPAAKPVK GDFAVGTIEE FDREKELKAY REMLLIRRFE EKAGQLYGMG
FIGGFCHLYI GQEAVVVGMQ MALKLGDQVI TGYRDHGHML ACGMSARGVM AELTGRRGGL
SKGKGGSMHM FSKEKHFYGG HGIVGAQVSL GTGLAFANKY RGNDNVSLAY FGDGAANQGQ
VYESFNMARL WNLPVIYVIE NNRYAMGTSV ARASAQTDFS QRGVSFNIPG FKVDGMDVRA
VKAAAVQAVE HCRAGKGPVI LEMETYRYRG HSMSDPAKYR SKDEVQKMRS EHDPIEQVRL
RLLEKGWASE DDLKLIDKDV RDIVADSADF AQADPEPDAS ELYTDILL
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