| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1893 |
|---|
| Symbol | |
|---|
| ID | 7387205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1568994 |
|---|
| End bp | 1570124 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643651167 |
|---|
| Product | ABC transporter membrane spanning protein |
|---|
| Protein accession | YP_002549364 |
|---|
| Protein GI | 222148407 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
|---|
| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.228416 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAATG CCACGGTCGA TGCCGAACAG CTGGAAGGGG AGGCCGGGCA GCGGCTTCGC
CTGAGTGGTT CGTGGCGCAA TACCACGGTT GATACCGTGA TTCCAAAACT GCTGGAACTG
CGCGAAACGT TGAACGGCCA TGTCGAGATC GACATCACCG GCATTTCAAG TCTTGATACA
TCCGGCGCTT GGATCATCCG CCGCATCGAG CTGGCCGCTT CCAAGCAGGG CGATGTGCAG
ATTGTCGGTG GCAGCGACGC GATGCGGGAG CTGATTTCCG CGCTGCCCGA ACAGCCGCCT
TTGCCAGAAA AGGTCGTGGA TCGCCGCCCC TTCTTCCAGC GGGTGTTAGA GCCGGTTGGC
AAGATGAGCG TCAGCCTGTT TGAAGACGTG TTGGCCATGA GCTATGTGCT CGGCTCGGCG
GTGCGTGGCA CGCAATCCAA GGAAAGACGC GGCGGGCGGG CGTCCATTGC TTCCATCGTC
AATCAGTTGG ACCATATGGG TCTTCGGGCG GTACCGATCA TCCTGCTGAT GTCCTTCCTG
ATCGGGGCGA TCATCGCCCA GCAGGGCGCC TTCCAGCTTC GCTATTTCGG CGCCGAAGTC
TTCGTGGTCG ACCTGGTCGG CATTCTGCAA TTGCGCGAGA TCGGCGTTCT GTTGACCGCC
ATCATGATCG CTGGCCGTTC GGGCAGCGCC ATCACCGCTG AAATCGGCTC GATGAAGATG
CGCGAGGAAG TGGATGCGCT GAAGGTTATC GGCCTCAACC CAATCGGCGT TCTGGTGTTG
CCGCGTATCG TCGCTCTGGT CATTGCACTG CCGCTTCTGA CGGTTATCGC CAATTTTGCG
GCGCTTTACG GTGCCGCGGT CGTTTCCTTT GCCTATTCCG GCATTACCTT TCAGGTCTTT
GTTACCCGTC TGCATGACGC CGTGGATTAT GCCACCTTCG CTGCCGGCCT GATCAAGGCG
CCGTTCATGG CTGTGGTGAT CGGCATCGTC GCGGCGGTGG AGGGTATGAA GGTTGGCGGT
AGCGCCGAGT CGCTCGGCCA GCACGTCACC GCCTCGGTGG TGAAGTCGAT CTTCGTCGTC
ATCCTCATGG ATGGGCTGTT TGCCGTATTC TACGCAGCGA TCAATTTTTA A
|
|---|
| Protein sequence | MDNATVDAEQ LEGEAGQRLR LSGSWRNTTV DTVIPKLLEL RETLNGHVEI DITGISSLDT
SGAWIIRRIE LAASKQGDVQ IVGGSDAMRE LISALPEQPP LPEKVVDRRP FFQRVLEPVG
KMSVSLFEDV LAMSYVLGSA VRGTQSKERR GGRASIASIV NQLDHMGLRA VPIILLMSFL
IGAIIAQQGA FQLRYFGAEV FVVDLVGILQ LREIGVLLTA IMIAGRSGSA ITAEIGSMKM
REEVDALKVI GLNPIGVLVL PRIVALVIAL PLLTVIANFA ALYGAAVVSF AYSGITFQVF
VTRLHDAVDY ATFAAGLIKA PFMAVVIGIV AAVEGMKVGG SAESLGQHVT ASVVKSIFVV
ILMDGLFAVF YAAINF
|
|---|
| |