Gene Avi_1841 details

Gene Information

• Locus tag: Avi_1841
• Symbol: rplD
• ID: 7386803
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1533505
• End bp: 1534125
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651127
• Product: 50S ribosomal protein L4
• Protein accession: YP_002549324
• Protein GI: 222148367
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0088] Ribosomal protein L4

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00656496
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACTCA ACGTCAAAAC CCTCGAGGGG ACGGATGCCG GTACGGTTTC CCTGTCCGAC 
GCCATTTTCG GCCTCGAACC CCGTCAAGAT ATCATTGCTC GCATGGTTCG TTGGCAGCTT 
GCCAAGAAAC AGCAGGGCAC ACACAAGACC AAGACCCGTG CCGAAGTATC GCGCACCGGT 
GCCAAGATGT ACAAGCAGAA GGGTACGGGC CGCGCTCGTC ACCATTCGGC TCGCGCTCCT 
CAGTTCCGCG GCGGCGGCAA GGCCCACGGC CCAGTCGTTC GCAGCCACGA GCATGATCTT 
CCCAAGAAGG TTCGCGCGCT CGCTCTGCGT CACGCTCTGT CTGCCAAGTT CAAGGCTGAC 
GAACTGATCA TCGTCGATCA GCTTGTTGCT GCCGATGCCA AGACCAAGGC CGCCGTTGGC 
GTGTTCGAAG CTCTGGGGCT GAAGAATGCG CTGGTGATCG GTGGCGTCGA ACTCGACGTC 
AATTTCAAGC TCGCTGCCGC GAACATCCCA AATATCGATG TTCTGCCGGT TCAGGGCATC 
AACGTTTATG ACATTCTGCG TCGCGGTAAG CTCGTGCTTT CCAAGGCTGC GGTTGAAGCT 
CTGGAGGAGC GGTTCAAATG A 

 

Protein sequence

MELNVKTLEG TDAGTVSLSD AIFGLEPRQD IIARMVRWQL AKKQQGTHKT KTRAEVSRTG 
AKMYKQKGTG RARHHSARAP QFRGGGKAHG PVVRSHEHDL PKKVRALALR HALSAKFKAD 
ELIIVDQLVA ADAKTKAAVG VFEALGLKNA LVIGGVELDV NFKLAAANIP NIDVLPVQGI 
NVYDILRRGK LVLSKAAVEA LEERFK