| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1755 |
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| Symbol | rnr |
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| ID | 7386744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1465913 |
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| End bp | 1468291 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651064 |
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| Product | ribonuclease R |
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| Protein accession | YP_002549265 |
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| Protein GI | 222148308 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGACCTTGA GCAAATCCCC GCGACCCGAC ACCCGCAGCC TCACCAACAG AACGCGGAAG
GCGGAGCTTG CGGCGAAAAA GGCAGCGGAC AAGAATGAAA CGGTGATCAT TCACGGGGCG
GTGCCGCCCC GTGAAATCCT GATGCAGTTC ATCACCGACA ACCCCGACCG GGCATCCAAG
CGCGAAATCG CCAAGGCTTT TGGCCTGAAG GGCGAAGCCC GTATTGAATT GAAGGAAGCC
CTGCGGGCTT TGGAAGAAGA CGGGCTGGTC AACAAGAACC GCAAGTCGCT GAGCCGACCT
GGGGCATTGC CGCCCGTGAC CGTTCTCGAC ATCACCACCC GTGACAAGGA TGGCGACCTG
ATCGGGCGTC CCGCCGAATG GCCGGATGAA CTGGGCGCTG CCCCTGCCGT TTCCATCCGC
CAGTCCAGCG CGGACCGCGC CAAGGGCAAG ACGCCGGTTG GCGGACTAGG CGACCGGGTT
TTGGCAAAGA TTTTCCCCTC CAAGGACCAT ATCGGTCCCG CCTATACCGC CCGGATCATC
AAAGTGATCG ACAAGCGGCG CGGCGCGCTT TTGGGCGTCT ACCGTGAAAT GGCCGGTGAT
ACCGGCGGCA GGCTGATGCC GATCGAGCGG CGCGGCGAGG AAATGGTCAT CGAGGCCGCC
GATGTCGGCG ACGCCCGCGA CGGCGATCTG GTCGAGGTGG AAGTCGGGCG GCTCTCCAGC
CGTCTGGGTC TTGCCCGCGC CAAGGTTCTG TCGGTGATTG GCTCGGTGGC ATCAGAAAAA
GCCATCTCGA TGATCGCCAT CCATGCCCAT GGCATTCCAC ATATCTTCCC GCAATCGGTG
CTAGACGAGG CCGATGCCGC CAAACCGGCC AGCATGGCGC ATCGGGAGGA CTGGCGCAGC
TTGCCGCTGG TCACGATCGA CCCGCATGAC GCCAAGGACC ATGACGACGC TGTTCATGCC
GAGCCGGACC CCTCGCCCGA TAATCCGGGC GGCGTGATCG TCACCGTGGC GATTGCCGAC
GTCTCCTATT ATATCCGCAG TAAGTCGGCG CTGGACCGCG AGGCGCTGAA GCGCGGCAAT
TCGGTCTATT TCCCCGACCG GGTCGTGCCG ATGCTGCCGG AGCGGATTTC CAACGATCTC
TGCTCGCTGC GCGAGGGCGT TGACCGGCCG GCGCTGGCCG TGCGCATGGT GTTTTCCCAT
GAAGGCCGTA AGGCCAGCCA TACCTTTCAT CGCATCATGA TGAAGAGTGC GGCCAAACTG
TCCTACCAAC AGGCACAGGC CGCTATTGAC GGCAACCCGG ATGACAAGGC TGGGCCGCTG
CTGGAGCCGA TCCTGAAGCC GCTTTGGGCC GCCTATGCGA TCCTGAAGCG TGGCCGCGAC
CGCCGTCAGC CACTGGAACT GGACATGCCG GAGCGCAAAA TCATCCTTAA AGCCGATGGC
ACAGTGGATC GGGTCTTTGT ACCAGAACGG CTGGACGCCC ATAAGCTGAT CGAGGAAATG
ATGATCCAGG CCAATGTGGC CGCCGCCGAG ACGCTGGAGA AGAAAAAACA GCCGCTGGTC
TACCGCATCC ACGATACGCC AACATTGGCC AAGCAGGAAG TGCTGCGCGA GTTCCTGGCC
ACCATCGGCT TTTCACTGGC CAAGGGCGGC AATCTGCGCT CCAATTCGTT CAATGGTATC
CTCGCCAAGG CGCAGGACAC GCCGCATCAG ACCATCGTCA ACGAAATGGT GCTGCGCTCG
CAGAGTCAGG CGGTCTATAG CCCCGAGAAT ATCGGCCATT TCGGCTTGAA CCTTTTGAAA
TACGCGCATT TCACCTCCCC CATCCGCCGC TACGCCGACC TGATCGTGCA TCGGGCGCTG
GTTGGCACGC TAGGGCTTGG CGAAGGCGGC ATTACATCCG ATGAAGAAGC GGCGCTGGCC
GATGTCGCCG CCGAAATTTC CACCTTCGAG CGCCGCGCCA TGGCAGCCGA GCGCGACACG
ATCAACCGGC TGATCGCTCA CCATCTGGCA ACACGGATCG GCGACGAATT CGACGGGCAG
GTCTCAGGCG TCACCAAATC CGGCCTGTTC ATCTCCCTGC CGCAATATGG CGCTGATGGC
TTCATTCCGG TCTCAACGCT TGGCCGCGAC TATTTCATCT ACGATGAGGC ACATCAGGCA
CTGACCGGCG AAAAGACCGG GCTTGGCTAT CAATTGGGGG ATAGCGTCAG CGTCAAGCTG
GTGGAAGCCG TGCCGCTGGC CGGTGCCTTG CGGTTTGAAA TCCTCAGCGA AGGCAAGAAA
ATGCCGACCG GCATCCGTTC CTTCCACAAG GCGACGCGGC GCGGACGGCC TGGTCCCGGC
AAGACACCGG GAACAAGACC ACCGCGTGGA AGGCGTTGA
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| Protein sequence | MTLSKSPRPD TRSLTNRTRK AELAAKKAAD KNETVIIHGA VPPREILMQF ITDNPDRASK
REIAKAFGLK GEARIELKEA LRALEEDGLV NKNRKSLSRP GALPPVTVLD ITTRDKDGDL
IGRPAEWPDE LGAAPAVSIR QSSADRAKGK TPVGGLGDRV LAKIFPSKDH IGPAYTARII
KVIDKRRGAL LGVYREMAGD TGGRLMPIER RGEEMVIEAA DVGDARDGDL VEVEVGRLSS
RLGLARAKVL SVIGSVASEK AISMIAIHAH GIPHIFPQSV LDEADAAKPA SMAHREDWRS
LPLVTIDPHD AKDHDDAVHA EPDPSPDNPG GVIVTVAIAD VSYYIRSKSA LDREALKRGN
SVYFPDRVVP MLPERISNDL CSLREGVDRP ALAVRMVFSH EGRKASHTFH RIMMKSAAKL
SYQQAQAAID GNPDDKAGPL LEPILKPLWA AYAILKRGRD RRQPLELDMP ERKIILKADG
TVDRVFVPER LDAHKLIEEM MIQANVAAAE TLEKKKQPLV YRIHDTPTLA KQEVLREFLA
TIGFSLAKGG NLRSNSFNGI LAKAQDTPHQ TIVNEMVLRS QSQAVYSPEN IGHFGLNLLK
YAHFTSPIRR YADLIVHRAL VGTLGLGEGG ITSDEEAALA DVAAEISTFE RRAMAAERDT
INRLIAHHLA TRIGDEFDGQ VSGVTKSGLF ISLPQYGADG FIPVSTLGRD YFIYDEAHQA
LTGEKTGLGY QLGDSVSVKL VEAVPLAGAL RFEILSEGKK MPTGIRSFHK ATRRGRPGPG
KTPGTRPPRG RR
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