| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1523 |
|---|
| Symbol | |
|---|
| ID | 7386481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1273881 |
|---|
| End bp | 1274936 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643650889 |
|---|
| Product | extracellular metalloprotease precursor protein |
|---|
| Protein accession | YP_002549094 |
|---|
| Protein GI | 222148137 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3227] Zinc metalloprotease (elastase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.103754 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGTTG CCATGTGCCG CTATTGCCAA ATCATTCCCG AAAAAGTGCT GATTGCCCTA
TCCCGTGACC AGGATTTTCC AGCCGCCGTG CGCGAGCGGT TACAGGAAAC CATGCATCAC
GACCATCAAC TGCGCCAGTT TCGCGACAGC GCCCGCCAGC TGACCATCGC CAAACGGCCT
TTCCGGGCGT TTTCCGTGAC CGTGGCCCAG GCACCTGATA TCCCGGTCTA TACCTGCAAT
AACGGCATGA CCCTTCCCGG CGTACAGATC GCCAATCCCG GCTCTTCAAC GGATGCCCAG
GTGAAGACCA CATTCGATAC AACGACCGGG GTGGAGCAAT TCTACAGCAG CGTCTTCAAG
CGTAACTCCA TCGACGGCAA TGGCATGACG ATCCTGTCGT CTGTGCATTA CGGCAGGGAT
TACAACAACG CCTTCTGGAA CGGCTCGCAA ATGGCCTATG GCGATGGCGA CGGGGAGATT
TTCACCCCGT TTTGTGAGAG CGCCGATGTG GTCGGCCATG AACTGACCCA TGGCATCACC
CAATATACCC TGGGCCTCGA CTATGAAAAC CAGCCGGGTG GGCTGAATGA AAGTCTCTCG
GATGTGTTCG GCAGCATGTT CAAGCAATGG ACGAAAGATC AGAATGCCGA TGAGGCCGAC
TGGCTGATCG GCAATGACAT TCTCGGCCCG ACGGCCCGGC AGAAATATAC CTGCCTGCGC
GACATGGCCA ATCCTGAAGC ATCCCATTGC ATGGCCGAGC AGATCAGCCA TTTCAGCGAT
TACCGCGATG GCATGGACCC ACATGAGAGC AGCGGCATCG CCAACCGCGC CTTTTATCTA
GCCGCCACCC GCATCGGCGG CAAAAGCTGG GACAAGGCCG GACAGATATG GTATGATGCA
CTCACAAAGA ATGGCAGCAA CCCGGACATG ACCATGGCGG AATTTGCCGA TGCGACCCGG
GCCGGAGCTG CCAGGCTTTA TCCAGGAGAT GGATCGCTCG CAGAGGTGCT CGACACCGCC
TGGAGCGAAG TGGGTCTGCA AAGTGCTTCG GTCTGA
|
|---|
| Protein sequence | MEVAMCRYCQ IIPEKVLIAL SRDQDFPAAV RERLQETMHH DHQLRQFRDS ARQLTIAKRP
FRAFSVTVAQ APDIPVYTCN NGMTLPGVQI ANPGSSTDAQ VKTTFDTTTG VEQFYSSVFK
RNSIDGNGMT ILSSVHYGRD YNNAFWNGSQ MAYGDGDGEI FTPFCESADV VGHELTHGIT
QYTLGLDYEN QPGGLNESLS DVFGSMFKQW TKDQNADEAD WLIGNDILGP TARQKYTCLR
DMANPEASHC MAEQISHFSD YRDGMDPHES SGIANRAFYL AATRIGGKSW DKAGQIWYDA
LTKNGSNPDM TMAEFADATR AGAARLYPGD GSLAEVLDTA WSEVGLQSAS V
|
|---|
| |