| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1368 |
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| Symbol | dop |
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| ID | 7389105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1143352 |
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| End bp | 1144827 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643650776 |
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| Product | serine protease DO-like protease |
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| Protein accession | YP_002548982 |
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| Protein GI | 222148025 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.200414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGGCGG GTGCCGTGAC GGTAACGCCT GCGCTGGCCG CGCCCGTCGA GGTTCAGGCG
CCGCAGGTGC CAAGCTTTGC CGATCTGGTC AGTGCCGTTT CGCCCGCCGT CGTCTCCATC
CGCGTCAAAT CGGATGTGCA GCAGGCCTCC GAGGATGGCA GCAATTTCTC CTTCAATGGT
CGTGACTTCG ACCAGCTTCC CGATCCTCTG AAGCGCTTCT TCAAGGAATG GGGCATGCCA
GGCCCCGGCG GTCCAGGTGG TCCAGGAGGC CCCAAGGGTG GACCGCATGC CGAGCGTCAT
GGCAAGCTGC GTCCGATTGC CCAAGGGTCG GGCTTCTTCA TCTCCGAGGA CGGCTATGTT
GTGACCAACA ATCACGTAGT TTCCGATGGC CAGGCCTATA CAGTGGTGAT GAATGACGGC
ACCGAATACG ATGCCAAGCT GGTCGGTAAG GACCCGCGCA CTGACCTCGC CGTTTTGAAG
GTCGATCAGC CGACCAAGAA ATTCACCTAT GTCGAATGGG CGCAGGACGA GAAGATCCGC
GTTGGTGACT GGGTCGTGGC CGTCGGCAAT CCTTTCGGTC TCGGCGGAAC CGTGACGTCG
GGTATCGTTT CGGCTTTTGG CCGTGATATC GGCTCCGGCC CTTATGACGA TTACATCCAG
ATCGATGCAC CGGTAAACCG GGGCAATTCG GGTGGGCCGG ACTTCAACCT CAGCGGCAAG
GTGGTCGGGA TCAACACGGC GATCTTCTCG CCATCGGGCG GTAGCGTCGG CATCGCCTTC
GCTATTCCGG CGGCGACTGC CAAGGATGTC GTTGCTGAAT TGATCAAGCA TGGCTCGGTG
CAGCGCGGCT GGCTTGGCGT GCAGATCCAG CCTGTCACCA AGGATATTGC CGAATCGCTC
GGTCTGGCCG ATGCCAAGGG CGCACTGGTG GCTGAGCCGC AAACCGGTTC TCCCGGTGAA
AAGGCCGGTA TCAAGCAGGG CGACGTGATT ACCGCCGTGA ATGGCGATCC GGTCAAGGAC
CCGCGTGACC TCGCCAAGCG CATTGCTGCC TTCCCGCCCA ATACCAAGGT CGATATTTCT
ATCTGGCGCA ATGGCAAGCC GACTGCCGTC AAGGTCGATC TCGGCACCTT GCCTGCTGAA
AAGGATACGG CCAGCAGTGA TGAGGATCAG GGCGCGCCCG AGCAGAACGC ACCGGCCACC
GAGCAGGCGC TTGCCAATCT CGGAGTCACT GTCCAGCGTG CCGATGACGG CAAAGGCCTG
ACGATCACCA ATGTCGATCC GGATTCCGAC GCTGCCGACA AGGGGCTGAA GACCGGCCAG
AAGATCACGT CCGTTAACAA CCAGCAGGTC TCCAGCGCCG CCGAGGTCAA GAAGATCCTT
GATCAGGCCA AGAAGGACGG TCGCACCAAG GCGCTCTTCC AGGTGGAAAC CGACAATGGC
AGCCGCTTCA TCGCCCTGCC GATCAACCAG GGCTGA
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| Protein sequence | MLAGAVTVTP ALAAPVEVQA PQVPSFADLV SAVSPAVVSI RVKSDVQQAS EDGSNFSFNG
RDFDQLPDPL KRFFKEWGMP GPGGPGGPGG PKGGPHAERH GKLRPIAQGS GFFISEDGYV
VTNNHVVSDG QAYTVVMNDG TEYDAKLVGK DPRTDLAVLK VDQPTKKFTY VEWAQDEKIR
VGDWVVAVGN PFGLGGTVTS GIVSAFGRDI GSGPYDDYIQ IDAPVNRGNS GGPDFNLSGK
VVGINTAIFS PSGGSVGIAF AIPAATAKDV VAELIKHGSV QRGWLGVQIQ PVTKDIAESL
GLADAKGALV AEPQTGSPGE KAGIKQGDVI TAVNGDPVKD PRDLAKRIAA FPPNTKVDIS
IWRNGKPTAV KVDLGTLPAE KDTASSDEDQ GAPEQNAPAT EQALANLGVT VQRADDGKGL
TITNVDPDSD AADKGLKTGQ KITSVNNQQV SSAAEVKKIL DQAKKDGRTK ALFQVETDNG
SRFIALPINQ G
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